Analysis Report | PIPseeker 03.00.01
JP20230613_FR_1
Mouse-Brain-Nuclei
Key Metrics
| Total Reads | 387,095,153 | Reads Above Min. Length | 381,333,704 |
| Reads w. Valid Barcodes | 305,828,862 | Reads Mapped to Transcripts | 240,364,542 |
| % Reads Mapped | 78.59 | % Reads in Cells | 11.49 |
| Cells | 1,658 | Mean Reads Per Cell | 233,471 |
| Duplication Rate | 1.713 | % Sequencing Saturation | 41.61 |
| Transcripts in Cells | 21,098,770 | Median Transcripts Per Cell | 11,630 |
| Genes Expressed in Cells | 27,016 | Median Genes Per Cell | 3,620 |
| % Mito. Transcripts in Cells | 0.07 |
Clustering
Graph Based (18 Clusters)
| Cluster | Cell Count | Cell Type (mouse-whole-brain) | Feature Rank |
| Primary | Secondary | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 |
| 1 | 228 | - | - | Qk | Zbtb20 | Xist | Mbp | Plp1 | Erbb4 | Plpp3 | Meis2 | Fth1 | Son | Nfia | Slc1a3 | Atp1a2 | Slc4a4 | Prkd1 | Dock1 | Foxo1 | Maml2 | Apoe | Glul | Lama2 | Mertk | Rgs9 | Sox2ot | Pbx3 | Sox6 | Actb | Mobp | mt-Co1 | Slc6a1 | Cst3 | Chd7 | Igsf11 | Prex2 | Dach1 | Dock10 | Zswim6 | Dgkb | mt-Co3 | Cdh19 | Npas3 | Trpm3 | Pard3 | mt-Co2 | Kank1 | Frmd4b | Rarb | Neat1 | Meis1 | Plcl1 |
| 2 | 163 | DEGLU1 | DEGLU2 | Vav3 | Grm1 | Prkcd | Lrrc7 | Adarb2 | Synpo2 | Frmd4a | Plekhg1 | Lef1 | Ntng1 | Nell1 | Adarb1 | Plcb4 | Gabbr2 | Sh3d19 | Inpp4b | Anks1b | Cit | Kcnc2 | Cacna1c | Adcy8 | Syt9 | Rora | Hdac9 | Auts2 | Ccdc136 | Ptpn3 | Ildr2 | Robo1 | Clmn | Tcf7l2 | Ptpn4 | Xkr4 | Stox2 | Apbb2 | Rbfox1 | Tanc1 | Rims2 | Lrch1 | Phactr2 | Zmat4 | Kcnip4 | Samd5 | Shc3 | Il1rap | Shisa6 | Rbms3 | Peak1 | Rnf220 | Lrrn2 |
| 3 | 129 | - | - | Gm49678 | Il1rapl2 | Ptprd | Cdh10 | Tspan5 | Dpp10 | Agbl4 | Pcdh15 | Ntm | Ext1 | Pde1a | Adgrb3 | Pdzrn3 | Nwd2 | Chsy3 | Khdrbs3 | Scube1 | Pcdh7 | Kcnt2 | Fat3 | Pex5l | Nav3 | Ndst3 | Arpp21 | Syt1 | Ldlrad4 | Oxr1 | Nrcam | Thrb | Sorl1 | Fam189a1 | Gpc6 | Xylt1 | Hs3st2 | Nlgn1 | Pde4b | Car10 | Smyd3 | Erc2 | Bmpr1b | Bcl11a | Slc24a2 | Mical2 | Satb2 | Pak5 | Plcxd3 | Klhl29 | Dlgap2 | Ryr2 | Grm3 |
| 4 | 127 | - | - | Enpp2 | Rasgrf2 | Col19a1 | Lingo2 | Rgs6 | Celf2 | Pdzrn3 | Mef2c | Dlgap2 | Cacna2d1 | Cadm2 | Pam | Sorbs2 | Csmd1 | Rasal2 | Prkca | Rfx3 | Il1rapl1 | Kctd16 | Cacng3 | Dlg1 | Mlip | Pparg | Camk2a | Nectin3 | Gpc6 | Nwd2 | Lrrtm4 | Chrm3 | Ntrk3 | Grin2a | Gria3 | Ryr2 | Adcy2 | Osbpl1a | Slit3 | Cnksr2 | Tmem132d | Tafa1 | Erc2 | R3hdm1 | Kcnh7 | Sidt1 | Opcml | Sipa1l1 | Nrgn | Slc9a9 | Wdr17 | Syn3 | Cux2 |
| 5 | 118 | - | - | Kcnip4 | Cacna1c | Kcnma1 | Dpp6 | Tshz2 | Hdac9 | Ptpn4 | Trpm6 | Prox1 | Ptpn3 | Mctp2 | Plekhg1 | Robo1 | Cit | Gm20754 | Meg3 | Cntnap2 | Rims2 | Kcnc2 | Gabra4 | Lrch1 | Synpo2 | Cpne7 | Fryl | Nrbp2 | Osbpl3 | Cntn6 | Shc3 | Tanc1 | Fgf13 | Frmd4a | Ildr2 | Gabrb1 | Ctif | Cntnap5c | Ntng1 | Adarb1 | Ccdc136 | Zfp804b | Zmat4 | Far2 | Col25a1 | Slc17a6 | Tenm2 | Tcf7l2 | Amotl1 | Tmem163 | Kcnn3 | Chrm2 | Vwc2 |
| 6 | 118 | - | - | Aopep | Cdh9 | Opcml | Ptprk | Cadps | Ryr2 | Satb2 | Clstn2 | Syt1 | Ptk2 | Arpp21 | Erc2 | Nav3 | Ptprt | Slc24a2 | Syn3 | Tmem132d | Galnt14 | Me3 | Pcsk2 | Wipf3 | Cnksr2 | Nrcam | Tnr | Csmd2 | Kcnq5 | Rxfp1 | Sorbs2 | Pcdh7 | Runx2 | Kcnh1 | R3hdm1 | Schip1 | Sv2b | Rbfox3 | Robo3 | Hs3st2 | Slc9a9 | Cacna1e | Susd4 | Zeb2 | Chrm3 | Khdrbs3 | Sdk1 | Sorcs3 | Kctd16 | Csmd1 | Ppme1 | Gpm6b | Tspan5 |
| 7 | 116 | - | - | Rnf220 | Nxph1 | Rmst | Gm32647 | Zfhx3 | Ntng1 | Tox3 | Cpne7 | Arhgap24 | Lhfpl3 | Fgf13 | Slc17a6 | Necab1 | Tcf7l2 | Inpp4b | Cit | Rorb | Oprm1 | Synpo2 | Grin3a | Foxp2 | Celf4 | Syn2 | Fgf12 | Tenm1 | Egfem1 | Cntn6 | Shisa9 | Thsd7b | Mef2a | Tmem132c | Khdrbs2 | Tox | Rab3c | Hdac9 | Usp29 | Ddah1 | Cpne4 | Srgap1 | Mast4 | Phactr2 | Lsamp | Cntnap2 | Meg3 | Htr7 | Elavl2 | Vwc2 | Kcnd2 | Sgip1 | Galnt17 |
| 8 | 111 | - | - | Nhs | 5330434G04Rik | Xkr6 | Grip1 | Asic2 | Kcnip1 | Meg3 | Snhg11 | Galntl6 | Cacna2d2 | Gm45455 | Aif1l | Slc35f1 | Usp29 | Rbms3 | C130073E24Rik | Dpp6 | Gad2 | Alk | Grik1 | Dnm3 | Gnas | A230057D06Rik | 1700125H20Rik | Osbpl9 | Grid2 | Lsamp | Cep112 | Iqsec3 | 6330411D24Rik | Gm45341 | Lhfpl3 | Snhg14 | Srgap3 | Tnrc6a | Ubash3b | Parp8 | Ank1 | Cdh13 | Amy1 | Galnt13 | A330076H08Rik | Ttc28 | Nkain3 | Ankrd55 | Tulp4 | Camk2d | Tmem178b | Slc8a3 | Prkn |
| 9 | 97 | - | - | Pex5l | Hcn1 | Tafa1 | Gm2164 | Ldb2 | Dab1 | Sgcz | Dpp10 | Gm19410 | Efr3a | Nebl | Iqgap2 | Nos1ap | Gm30382 | Sox5 | Nfib | Ctnna2 | Ralyl | Ano4 | Htr1f | Klhl32 | Focad | Pde1a | Tcerg1l | Magi2 | Gm12394 | Sorl1 | Grid2 | Sorcs1 | Tfdp2 | Ncam2 | Gm17167 | Ndst3 | Nrp1 | Cdh20 | Rasgrf1 | Tmem200a | Prkcb | Gria3 | Trpc4 | Ppm1e | Ralgapa2 | Parm1 | Kcnn2 | Opcml | Klhl1 | Gria2 | Neto1 | Rapgef5 | Fmn1 |
| 10 | 79 | - | - | Ptprd | Kcnh5 | Mef2c | Hs6st3 | Pdzrn3 | Celf2 | R3hdm1 | Unc5d | Sorcs1 | Grm3 | Fat3 | Nol4 | Nrg1 | Myo16 | Lrrc4c | Pcdh15 | A830036E02Rik | Kcnh7 | Gpr158 | Prr16 | Camk4 | Nyap2 | Schip1 | Oxr1 | Epha4 | Kcnb2 | Kcnh1 | Arpp21 | Gria4 | Fhod3 | Rorb | Nav3 | Gm20752 | Cacna2d1 | Tmem132d | 4930578G10Rik | Nlgn1 | Agbl4 | Pak5 | Negr1 | 1700047F07Rik | Cdh10 | Prmt8 | Scube1 | Ptprk | Ldlrad4 | Car10 | Unc13b | Galntl6 | Kctd16 |
| 11 | 75 | - | - | Hs3st4 | Zfpm2 | Frmpd4 | 4930551E15Rik | Etl4 | Cdh18 | Tle4 | Slc8a1 | Ptk2 | A830018L16Rik | Vxn | Fut9 | Grik3 | Pde1a | Mctp1 | Chsy3 | Khdrbs3 | Dlc1 | Gas7 | Pde4d | Nfib | Tmem178 | Dlg2 | Mmp16 | Dpp10 | Ano3 | Ext1 | Cdh11 | Nrg3 | Pcdh9 | Lrp1b | Mdga2 | Slc35f4 | Csmd2 | Slc1a2 | Slc35f1 | Prickle1 | Prkce | Ipcef1 | Adcy2 | Garnl3 | Pbx1 | Mast4 | Grik4 | Nos1ap | Ank2 | Neto1 | Thsd7b | Large1 | Sema5a |
| 12 | 71 | MSN1 | MSN2 | Adcy5 | Rgs9 | Gm10754 | Rarb | Foxp1 | Dach1 | Gnal | Meis2 | Dgkb | Cacnb2 | Pde10a | Caln1 | Phactr1 | Kcnab1 | Pard3 | Actn2 | Ryr3 | Spock3 | Cacna2d3 | 6530403H02Rik | Grm5 | Ppp3ca | Dcc | Galnt13 | Bcl11b | Gm1604a | Pbx3 | Plppr1 | Reln | Strn | Unc13c | Gprin3 | Adamts3 | Gad2 | Slc4a4 | Ssbp2 | Camk4 | Pde7b | Zswim6 | Grik2 | Pde2a | Gpr158 | Mctp1 | Stk32a | Fgf14 | Pde1b | Kazn | Ppp1r9a | Myt1l | Elmod1 |
| 13 | 47 | - | - | Sparcl1 | Pard3b | mt-Co1 | Glul | Maml2 | Actb | Zbtb20 | Apoe | Atp1a2 | Dock1 | Cmss1 | Calm1 | Msi2 | Nfia | Sparc | Cmtr2 | Mt1 | Hsp90ab1 | Ubb | Prex2 | Cst3 | Neat1 | Ptma | Qk | Ubc | Slc38a3 | Plpp3 | mt-Co3 | Hnrnpa2b1 | Son | Gm973 | Tuba1a | mt-Cytb | Gm19951 | Itm2b | Wwtr1 | Hsp90aa1 | Eef1a1 | Ctnna1 | Rps29 | Gja1 | Rgs12 | Serbp1 | Laptm4a | Hspa8 | Macf1 | Fth1 | mt-Co2 | Nxn | Nfkbia |
| 14 | 47 | - | - | Lhfpl3 | Meg3 | Slc24a3 | Nxph1 | Ralyl | Car10 | Nell1 | Fgf13 | Gap43 | Camk2d | Cntnap4 | Kirrel3 | Plxdc2 | Ccdc136 | Cpne7 | Snx29 | Ntng1 | Galnt13 | Vav3 | Ctnna2 | Plcb4 | Kcnip4 | Lrfn5 | Cdh18 | Ptprz1 | Nrbp2 | Tox3 | Kcnc2 | Inpp5a | Synpo2 | Lingo2 | Btbd11 | Grm7 | 6030443J06Rik | Hecw1 | Eps8 | Rian | Rims2 | Tcf7l2 | Alk | Spock3 | Inpp4b | Gpc5 | Cdh8 | Sema6a | Unc5c | Calb1 | Nrxn1 | Dpp6 | Tenm1 |
| 15 | 41 | - | - | Rarb | Gm10754 | Rgs9 | Phactr1 | Dach1 | Foxp1 | Adcy5 | Meis2 | Caln1 | Ppp3ca | Grm5 | 6530403H02Rik | Dgkb | Celf2 | Zswim6 | Cacna2d3 | Camk4 | Elmod1 | Mctp1 | Cacnb2 | Pde10a | Dlg2 | Kcnab1 | Pbx3 | Prkcb | Actn2 | Dcc | Csmd1 | Pde2a | Strn | Itpr1 | Ryr3 | Cacna1e | Adamts3 | Baiap2 | Fgf14 | Nrg1 | Syt6 | Plcb1 | Gprin3 | Stk32a | Ror1 | Alcam | Slc35f3 | Gnal | Ano3 | Nrxn3 | Pdzd2 | Slc4a4 | Hs3st4 |
| 16 | 38 | - | - | Grip1 | Erbb4 | Dlgap1 | Kcnc1 | Kcnmb2 | Tcf4 | Btbd11 | Gad1 | Sox6 | Esrrg | Hcn1 | Galntl6 | 6330411D24Rik | Kcnip1 | Zfp536 | Gm1604a | Pde5a | Nxph1 | Pam | Cemip | Ubash3b | Plxna4 | Frmd5 | Fgf12 | Sh3rf3 | Utrn | Srrm4 | Klf12 | Kcnc2 | Rbms3 | Rnf144b | Limch1 | Enox1 | Mitf | Cntnap4 | Cacna2d2 | Adra1a | Dlgap2 | Col19a1 | Vwc2 | Plcxd3 | Lrrc4c | Fam135b | Stambpl1 | Thrb | Gm13629 | Grik1 | Atrnl1 | Maf | Afap1 |
| 17 | 32 | MFOL2 | MFOL1 | Dock10 | St18 | Mobp | Tspan2 | Mbp | Plp1 | Zfp536 | Map7 | Pde4b | Pcdh9 | Tmeff2 | Plcl1 | 1700047M11Rik | Cdc37l1 | Qk | Ccp110 | Mog | Prr5l | Daam1 | Mag | Nkain2 | Erbin | Septin7 | Cdh19 | Phlpp1 | Erbb4 | Gm16168 | St6galnac3 | Bcas1 | Klhl2 | Ugt8a | Foxn3 | Plekha1 | Mal | Creb5 | Cldn11 | Ppp1r16b | Aspa | Gjc3 | Baz2b | Slain1 | Plekhh1 | Sytl2 | Slc12a2 | Zeb2 | Myo6 | Tmod2 | Phldb1 | Sox2ot | D7Ertd443e |
| 18 | 21 | - | - | Epha6 | Zbtb20 | Dock4 | Gria1 | Nr3c2 | Tcf4 | Epha5 | Epha7 | Hs3st4 | Prkca | Trhde | Nrxn3 | Tafa1 | Cadm2 | 4930551E15Rik | Nrp1 | Trpc5 | Nell2 | Cpne4 | Clstn2 | Enox1 | Dgkg | Grik4 | Shisa6 | Epha4 | Dok6 | Ccbe1 | Nkain3 | Frmpd4 | Malat1 | Srgap3 | Dpyd | Sipa1l3 | Galnt17 | Dock9 | Wipf3 | Ppfia2 | Prkg1 | Camk1d | Gria2 | Magi2 | Ak5 | Rgl1 | Slit1 | Cyp7b1 | Exoc6b | 4921539H07Rik | Grin2a | Mgat4c | Schip1 |
Key Metrics
| Total Reads | 387,095,153 | Reads Above Min. Length | 381,333,704 |
| Reads w. Valid Barcodes | 305,828,862 | Reads Mapped to Transcripts | 240,364,542 |
| % Reads Mapped | 78.59 | % Reads in Cells | 33.64 |
| Cells | 7,495 | Mean Reads Per Cell | 51,647 |
| Duplication Rate | 1.696 | % Sequencing Saturation | 41.03 |
| Transcripts in Cells | 61,778,216 | Median Transcripts Per Cell | 7,295 |
| Genes Expressed in Cells | 28,985 | Median Genes Per Cell | 2,714 |
| % Mito. Transcripts in Cells | 0.06 |
Clustering
Graph Based (25 Clusters)
| Cluster | Cell Count | Cell Type (mouse-whole-brain) | Feature Rank |
| Primary | Secondary | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 |
| 1 | 1,027 | MSN1 | MSN2 | Rarb | Rgs9 | Cacna2d3 | Foxp1 | Adcy5 | Phactr1 | Gm10754 | Dgkb | Ryr3 | Kcnab1 | Grm5 | Meis2 | Pde10a | Ppp3ca | Dach1 | Pde7b | Caln1 | Gnal | Camk4 | Cacnb2 | Slc4a4 | Fgf14 | Dcc | Pard3 | Plcb1 | Pdzd2 | Celf2 | Spock3 | Zswim6 | 6530403H02Rik | Slit3 | Actn2 | Kcnd2 | Prkcb | Alcam | Pbx3 | Atp2b1 | Adamts3 | Elmod1 | Nrg1 | Mctp1 | Gprin3 | Ppp1r9a | Pcp4 | Reln | Unc13c | Myt1l | Strn | Itpr1 | Plppr1 |
| 2 | 748 | - | - | Meg3 | Snhg11 | Usp29 | Nova1 | Nhs | Gm45455 | C130073E24Rik | Ahi1 | Gm45341 | 5330434G04Rik | Grid2 | Dscam | Gnas | Cadm1 | Snhg14 | Lhfpl3 | A330076H08Rik | Xkr6 | Dpp6 | Tro | A230057D06Rik | Cep112 | Unc5d | Ttc3 | Lsamp | Camta1 | Pcdh15 | Grb10 | Kcnip1 | Tnrc6a | Gm45323 | Rmst | Asic2 | Amy1 | Galntl6 | Fstl5 | Aif1l | Dpyd | Ttc28 | Cntnap5a | Ncam1 | Samd4 | Rasgrf1 | Syn3 | Grik1 | Cracd | Map2 | Tenm2 | Kcnq1ot1 | Brinp3 |
| 3 | 534 | - | - | Rgs9 | Rarb | Gm10754 | Meis2 | Zbtb20 | Dach1 | Adcy5 | Xist | Slc4a4 | Zswim6 | Foxp1 | Pbx3 | Phactr1 | Dgkb | Pard3 | Qk | Cacnb2 | Pde7b | Kcnab1 | Gnal | Caln1 | Ryr3 | Strn | Son | 6530403H02Rik | Pde10a | Unc13c | Igsf11 | Foxo1 | Plcb1 | Prkd1 | Gprin3 | Gng7 | Reln | Erbb4 | Ppp3ca | Frmd4b | Adamts3 | Cacna2d3 | Pcp4 | Mbp | Alcam | Stk32a | Actn2 | Pde1b | Ssbp2 | Plp1 | Stox2 | Dock10 | Spock3 |
| 4 | 477 | - | - | Ptprd | Pdzrn3 | Agbl4 | Cdh10 | Il1rapl2 | Dpp10 | Pcdh15 | Gm49678 | Pex5l | Ntm | Fat3 | Mef2c | Kcnt2 | Tspan5 | Oxr1 | Pde1a | Nav3 | Nwd2 | Prickle2 | R3hdm1 | Sorl1 | Arpp21 | Gpc6 | Fhod3 | Fam189a1 | Khdrbs3 | Grm3 | A830036E02Rik | Tafa1 | Nrcam | Ext1 | Ldlrad4 | Mical2 | Satb2 | Scube1 | Chsy3 | Car10 | Nlgn1 | Sv2b | Xylt1 | Syt1 | Galntl6 | Erc2 | Kcnh7 | Cnksr2 | Kcnb2 | Sidt1 | Htr1f | Grin2a | Dlgap2 |
| 5 | 464 | - | - | Enpp2 | Pdzrn3 | Rgs6 | Mef2c | Tafa1 | Col19a1 | Cadm2 | Rasgrf2 | Gpc6 | Sorbs2 | Camk2a | Dlgap2 | Prkca | Nwd2 | Pparg | Rasal2 | Lingo2 | Il1rapl1 | Pam | Cacna2d1 | Chrm3 | Opcml | Lrrtm4 | Csmd1 | Adcy2 | Mlip | Sphkap | Dlg1 | Gria3 | Kcnh7 | Cnksr2 | Ryr2 | Grin2a | Cacng3 | Tmem132d | Slc9a9 | Kctd16 | Rfx3 | Nectin3 | Nav3 | Celf2 | R3hdm1 | Ptprk | Cux2 | Erc2 | Sidt1 | Ppfia2 | Slit3 | Kalrn | Schip1 |
| 6 | 463 | - | - | Ptprk | Aopep | Opcml | Satb2 | Cdh9 | Ptprt | Csmd2 | Cadps | Tmem132d | Nav3 | Clstn2 | Ryr2 | Zeb2 | Slc24a2 | Tnr | Schip1 | Nrcam | Pcsk2 | Dpp10 | Arpp21 | Ext1 | Sorcs3 | Khdrbs3 | Kalrn | Sv2b | Gm49678 | Syt1 | Erc2 | Ppm1e | Sorbs2 | Syn3 | Galnt14 | Csgalnact1 | Mef2c | Ptk2 | Nell2 | Kcnt2 | Runx2 | Chrm3 | Kcnh1 | Sdk1 | R3hdm1 | Ldb2 | Cnksr2 | Rgs6 | Vxn | Malat1 | Plxna4 | Pcdh7 | Mgat5 |
| 7 | 455 | - | - | Zfpm2 | Hs3st4 | Garnl3 | Dpp10 | Vxn | Nos1ap | 4930551E15Rik | Frmpd4 | Khdrbs3 | Etl4 | Pde4d | Cdh18 | Pak5 | Me3 | Pde1a | Arpp21 | Tle4 | Pcdh9 | Fut9 | Chsy3 | Htr1f | Nfib | Gm17167 | Dlg2 | Dlc1 | Csmd1 | A830018L16Rik | Kcnh7 | Tmem178 | Dmd | 4930578G10Rik | Gm12394 | Foxp2 | Ano3 | Slc8a1 | Large1 | Ryr2 | Cdh9 | Ptprd | Gria3 | Ptk2 | Mctp1 | Grm8 | Trabd2b | Nrxn3 | Nrp1 | Slc1a2 | Nrg3 | Mmp16 | Grik3 |
| 8 | 452 | DEGLU1 | DEGLU2 | Vav3 | Synpo2 | Ntng1 | Cit | Plekhg1 | Adarb2 | Inpp4b | Grm1 | Kcnc2 | Cacna1c | Lrrc7 | Lef1 | Adarb1 | Plcb4 | Hdac9 | Frmd4a | Ptpn3 | Nell1 | Robo1 | Kcnip4 | Sh3d19 | Tcf7l2 | Ccdc136 | Ptpn4 | Gabbr2 | Ildr2 | Clmn | Prkcd | Adcy8 | Rora | Zmat4 | Tanc1 | Xkr4 | Rnf220 | Phactr2 | Rims2 | Lrch1 | Syt9 | Shc3 | Il1rap | Apbb2 | Stox2 | Syt7 | Galnt17 | Tenm1 | Fign | Fgf13 | Anks1b | Auts2 | Samd5 |
| 9 | 386 | - | - | Gm32647 | Rmst | Rnf220 | Ntng1 | Nxph1 | Lhfpl3 | Fgf13 | Tcf7l2 | Inpp4b | Cpne7 | Tox3 | Cit | Hdac9 | Zfhx3 | Tox | Cpne4 | Rorb | Syn2 | Slc17a6 | Mast4 | Celf4 | Synpo2 | Khdrbs2 | Lsamp | Necab1 | Cntn6 | Foxp2 | Kcnip1 | Rab3c | Arhgap24 | Fgf12 | Marchf1 | Thsd7b | Tmcc3 | Egfem1 | Grin3a | Meg3 | Zmat4 | Vav3 | Oprm1 | Epb41l4b | Cntnap2 | Tenm1 | Fhod3 | Elavl2 | Marchf3 | Plcb4 | Kcnip4 | Ptprm | Srgap1 |
| 10 | 330 | - | - | Slc24a3 | Lhfpl3 | Ralyl | Nxph1 | Meg3 | Vav3 | Fgf13 | Ntng1 | Car10 | Kcnc2 | Nell1 | Synpo2 | Rnf220 | Unc5c | Inpp4b | Ccdc136 | Robo1 | Ctnna2 | Lrfn5 | Cpne7 | Plcb4 | Kirrel3 | Kcnip4 | Camk2d | Tcf7l2 | Tox3 | Rian | Nrxn1 | Cdh18 | Gap43 | Ptprz1 | Tenm1 | Snx29 | Rims2 | Ccdc85a | Dpp6 | Gm32647 | Cntnap4 | Plxdc2 | Cep112 | Spock3 | Grm7 | Rab3c | Cntn5 | Zfp423 | Zfp804b | Gpc5 | Cit | Rmst | Rbms3 |
| 11 | 303 | - | - | Kcnip4 | Cacna1c | Robo1 | Hdac9 | Kcnma1 | Ptpn3 | Ptpn4 | Plekhg1 | Kcnc2 | Cit | Dpp6 | Tshz2 | Synpo2 | Ildr2 | Col25a1 | Cntnap5c | Ntng1 | Gm20754 | Vav3 | Ccdc136 | Prox1 | Frmd4a | Trpm6 | Lrch1 | Shc3 | Fgf13 | Zfp804b | Cpne7 | Gabra4 | Mctp2 | Rims2 | Inpp4b | Osbpl3 | Tcf7l2 | Nrbp2 | Tanc1 | Galnt17 | Phactr2 | Patj | Adarb1 | Rgs6 | Fryl | Zmat4 | Lef1 | Gabrb1 | Cntn6 | Cntnap2 | Nell1 | Gm49685 | Clmn |
| 12 | 295 | - | - | Grip1 | Tcf4 | Erbb4 | Dlgap1 | Galntl6 | Kcnip1 | Kcnmb2 | Nxph1 | Hcn1 | Sox6 | Kcnc1 | Zfp536 | Ubash3b | Rbms3 | Grik1 | Frmd5 | Maf | Ptprm | Pam | Limch1 | Dlgap2 | Col19a1 | Ptchd4 | Elavl2 | Alk | Utrn | Sh3rf3 | Etl4 | Xkr4 | Cntnap2 | Oxr1 | Nhs | Gad1 | Klf12 | Gad2 | Sox2ot | Dlx6os1 | Npas3 | Enox1 | Kcnc2 | Cntnap4 | Zeb2 | Ank1 | Thrb | Slc6a1 | C130071C03Rik | Cemip | Plxna4 | Btbd11 | Adra1a |
| 13 | 222 | - | - | Atp1a2 | Slc1a3 | Zbtb20 | Msi2 | Nfia | Apoe | Qk | Npas3 | Slc1a2 | Plpp3 | Sparcl1 | Maml2 | Mertk | Cst3 | Glul | Ptprz1 | mt-Co3 | Trpm3 | Dock1 | Son | Cpe | Prex2 | Sox6 | mt-Co1 | Gm3764 | Pard3b | Gpc5 | Htra1 | Mt1 | Mt2 | Acsl3 | Bcan | mt-Co2 | Ndrg2 | Plce1 | mt-Atp6 | Sparc | Lama2 | Dtna | Lpp | Nckap5 | Macf1 | Slc39a12 | Mir99ahg | Clu | Actb | Glis3 | Psap | Paqr8 | Aldoc |
| 14 | 214 | MFOL2 | MOL1 | Mbp | Plp1 | St18 | Qk | Tmeff2 | Plcl1 | Mobp | Map7 | Tspan2 | Zfp536 | Dock10 | Pde4b | Mag | Cdc37l1 | Septin7 | Phlpp1 | Mog | Zeb2 | Gm16168 | Gjc3 | St6galnac3 | Pcdh9 | Cldn11 | Erbb4 | Daam1 | Ugt8a | Bcas1 | Sox2ot | Kndc1 | Klhl2 | Nkain2 | Plekha1 | Phldb1 | Sytl2 | 1700047M11Rik | Nfasc | Ccp110 | Cdh19 | Creb5 | Wipf1 | Tmod2 | Aatk | Ppp1r16b | Erbin | Hipk2 | Otud7b | Nckap5 | Foxn3 | Rnf220 | Myo6 |
| 15 | 192 | - | - | Cdh12 | Gm49685 | Prr16 | R3hdm1 | Mef2c | Kcnh7 | Unc5d | Ptprd | Car10 | Pdzrn3 | Lingo2 | Kcnh5 | Lrrc4c | Arpp21 | Nav3 | Cadps2 | Myo16 | Rorb | Celf2 | Tmem132d | Kcnq5 | Mlip | Nol4 | Fat3 | Fstl4 | Camk2a | Brinp3 | Grm7 | Grin2a | Cacna2d1 | Kalrn | Gm17167 | Tenm4 | Pcdh9 | Ptprk | Fhod3 | Gm12394 | Grm3 | Schip1 | Sidt1 | Trhde | Ptprt | Cnksr2 | Kcnh1 | Cdh10 | 4930578G10Rik | Ryr2 | Oxr1 | Brinp1 | Lcorl |
| 16 | 188 | - | - | Pex5l | Tafa1 | Hcn1 | Ldb2 | Dpp10 | Gm2164 | Gm19410 | Dab1 | Ndst3 | Nfib | Nos1ap | Gm49678 | Sox5 | Ctnna2 | Magi2 | Pde1a | Ppm1e | Htr1f | Ralyl | Sgcz | Opcml | Iqgap2 | Rapgef5 | Ano4 | Gm12394 | Gm30382 | Sorl1 | Efr3a | Tox | Gm17167 | Fam135b | Klhl32 | Mical2 | Cdh20 | Miat | Gria3 | Khdrbs2 | Sorcs1 | Tcerg1l | Nebl | Cadps2 | Kcnh7 | Ncam2 | Trpc4 | Tspan5 | Mpped1 | Ralgapa2 | Pcsk5 | Fmn1 | Tmem200a |
| 17 | 139 | - | - | Cdh18 | Etl4 | Mmp16 | Frmpd4 | Fut9 | Nrxn1 | Hs3st4 | Adcy2 | Tle4 | 4930551E15Rik | Pcsk5 | Chsy3 | Nrg3 | Cdh11 | Slc1a2 | Serpini1 | Smyd3 | A830018L16Rik | Grik3 | Pbx1 | Dlc1 | Celf4 | Kcnt2 | Zfpm2 | Nav3 | Ptk2 | Nfib | Strbp | Mdga2 | Slc8a1 | Olfm3 | Ptprd | Khdrbs3 | Bcl11a | Gas7 | Asic2 | Satb2 | Ext1 | Rai14 | Fam135b | Svil | Slc35f4 | Csmd2 | Nhsl2 | Xylt1 | Vxn | Mctp1 | Dip2a | Efr3a | Gm33228 |
| 18 | 121 | - | - | Trpc4 | Slc8a1 | Nkain3 | Myo5b | Dgkg | Gria1 | Grm5 | Prdm16 | Mdga2 | Gria2 | Ripor2 | Arhgap6 | Nhs | Tmem178b | Trpm3 | Shisa6 | Sntg1 | Ano1 | Lncpint | Xkr6 | Usp29 | Dock10 | Ppm1e | Sox1ot | Gad2 | Nr3c2 | Slc35f1 | Nalf1 | Lzts1 | Ano2 | Col25a1 | Trio | Gabra2 | Tcerg1l | Epha5 | Ryr2 | Slc35f3 | Cacna2d2 | Tenm2 | Sox2ot | Lrrfip1 | Dlg2 | Slco3a1 | Meg3 | Dip2c | Dock4 | Dpp6 | Tro | Camk2d | Galnt13 |
| 19 | 90 | - | - | Zbtb20 | Nr3c2 | Dock4 | Epha6 | Gria1 | Epha7 | Shisa6 | Tcf4 | Prkca | Galnt17 | Epha5 | Clstn2 | Cadm2 | Ccbe1 | Ak5 | Tafa1 | Cpne4 | Grin2a | Malat1 | Magi2 | Nell2 | Trhde | Ppfia2 | Nkain3 | Nrp1 | Nfib | Dgkg | Zeb2 | Hs3st4 | Schip1 | Frmpd4 | Trpc5 | Dpyd | Grik4 | Epha4 | Wipf3 | Camk1d | Tafa2 | Msra | Cyp7b1 | Prkce | Enox1 | Arhgap39 | Nebl | Cdk14 | Sipa1l3 | Rnf182 | Srgap3 | 4930551E15Rik | Slc24a2 |
| 20 | 89 | PER2 | PER1 | Actb | Tmsb4x | Nfkbia | Bsg | Sparc | Calm1 | Cmtr2 | Rpl38 | Cldn5 | Rgs5 | Gnai2 | Myl12a | Nostrin | Epas1 | Ahnak | Rps29 | Myl6 | Cmss1 | mt-Co1 | Sgms1 | Tpt1 | Ubb | Abcb1a | Slc2a1 | Itm2a | Flt1 | Syt2 | Ptprb | Mecom | Rps27 | Ptma | Igfbp7 | Actg1 | mt-Co3 | Hspa8 | Id1 | Slco1a4 | Klf2 | Adgrl4 | Adgrf5 | Slco1c1 | Clic4 | Eef1a1 | Ly6c1 | Ctla2a | Eng | Hba-a1 | Pdgfd | S1pr1 | Myo10 |
| 21 | 86 | MFOL1 | MFOL2 | Plp1 | Mbp | St18 | Qk | Mobp | Tspan2 | Plcl1 | Map7 | Pcdh9 | Pde4b | Tmeff2 | Zfp536 | Mag | Zeb2 | Mog | Septin7 | Dock10 | Prr5l | Cdc37l1 | Phlpp1 | Phldb1 | Bcas1 | Enpp2 | Cdh19 | Gjc3 | Ccp110 | St6galnac3 | Ugt8a | Gm16168 | Erbb4 | Klhl2 | Tmod2 | Nkain2 | Cldn11 | Plekha1 | Pak5 | 1700047M11Rik | Sytl2 | Ppp2r3a | Ptprk | Slc24a2 | Mal | Nfasc | Wipf1 | Malat1 | Erbin | Kndc1 | Otud7b | Aspa | Ano4 |
| 22 | 68 | - | - | Gm10754 | Rgs9 | Rarb | Dach1 | Phactr1 | Celf2 | Csmd1 | Foxp1 | 6530403H02Rik | Meis2 | Adcy5 | Arpp21 | Cacna2d3 | Ano3 | Itpr1 | Cacnb2 | Elmod1 | Zswim6 | Dgkb | Ppp3ca | Kcnab1 | Dlg2 | Camk4 | Mctp1 | Homer1 | Caln1 | Cnksr2 | Atp2b1 | Nrg1 | Prkcb | Ryr3 | Pde10a | Grm5 | Dpp10 | Slc4a4 | Dlgap2 | Pde7b | Cacna1e | Adamts3 | Stk32a | Plcb1 | Pbx3 | Me3 | Alcam | Lmo3 | Dcc | Fgf14 | Mei4 | Gprin3 | Etl4 |
| 23 | 67 | - | - | Lrrc4c | Kcnmb2 | Ubash3b | Slc35f1 | Esrrg | Fign | Hs3st4 | Slc44a5 | 4930551E15Rik | Gad2 | Zfp804a | Cdh13 | Btbd11 | B130024G19Rik | Ak5 | Galntl6 | Scn3a | Gria4 | Nalf1 | Erbb4 | Dlgap1 | C130073E24Rik | Mmp16 | Elavl4 | Kcnma1 | Msi2 | Tmem108 | Gm13629 | Fgf13 | Vat1l | Marchf1 | Asic2 | Tmem178b | Vwc2 | Pkia | Tenm1 | Grik2 | Rgs6 | Nxph1 | Kcnip1 | Ano4 | Hs3st5 | Camk2d | Rbms3 | Ptprt | Zmat4 | Rnf220 | Myo16 | Rab3c | Gad1 |
| 24 | 51 | - | - | Cntn6 | Zfp804b | Gm32647 | Slc24a3 | Prr16 | Slc44a5 | Alk | Rbfox1 | Tenm4 | Tenm2 | Dlgap1 | Frmd4a | Cntnap2 | Kcnmb2 | Nell1 | Megf11 | Lsamp | Brinp3 | Stxbp5l | Cacna1c | Astn2 | Vwc2l | Kcnn2 | Nxph1 | Adarb1 | Cntn4 | Elavl2 | Meg3 | Sntb1 | Slit2 | Kirrel3 | Tmem108 | Mctp2 | Mgat4c | Grid1 | Gabrb1 | Col27a1 | Rgs6 | Unc5c | Nrxn1 | Sema5a | Rspo3 | Stt3b | Trpm6 | Ntng1 | Inpp4b | Foxn3 | Cdk14 | Zfp804a | Kcnc2 |
| 25 | 34 | - | - | Slc5a7 | Slc7a14 | Asic2 | Cpne4 | Elavl2 | Pde3a | Sntg1 | Galntl6 | Ctnna2 | Robo2 | Trpc3 | Chat | Tacr1 | Rbms3 | Slc17a8 | Ptchd4 | Luzp2 | Prkca | Pde4b | Inpp4b | Clstn2 | Pbx3 | Kcnt2 | Msi2 | Prima1 | Qrfprl | Ankrd44 | Nyap2 | Acly | Lrp1b | Chrm2 | Ptprs | Ccser1 | Serpine2 | Nalf1 | Sv2c | Adcy2 | Drd2 | Grid2 | Grk5 | Rtl4 | Gm49678 | Lhx8 | Carmil1 | Tmtc2 | Hs3st4 | Rbms1 | Hdac9 | Zfp521 | Cacna2d2 |
Key Metrics
| Total Reads | 387,095,153 | Reads Above Min. Length | 381,333,704 |
| Reads w. Valid Barcodes | 305,828,862 | Reads Mapped to Transcripts | 240,364,542 |
| % Reads Mapped | 78.59 | % Reads in Cells | 53.18 |
| Cells | 16,293 | Mean Reads Per Cell | 23,758 |
| Duplication Rate | 1.684 | % Sequencing Saturation | 40.62 |
| Transcripts in Cells | 97,697,027 | Median Transcripts Per Cell | 5,139 |
| Genes Expressed in Cells | 29,588 | Median Genes Per Cell | 2,157 |
| % Mito. Transcripts in Cells | 0.07 |
Clustering
Graph Based (23 Clusters)
| Cluster | Cell Count | Cell Type (mouse-whole-brain) | Feature Rank |
| Primary | Secondary | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 |
| 1 | 3,205 | MSN2 | MSN1 | Rgs9 | Rarb | Phactr1 | Cacna2d3 | Foxp1 | Ryr3 | Dgkb | Adcy5 | Pde10a | Kcnab1 | Gm10754 | Pde7b | Meis2 | Grm5 | Cacnb2 | Caln1 | Camk4 | Ppp3ca | Celf2 | Dach1 | Slc4a4 | Gnal | Fgf14 | Dcc | Plcb1 | Spock3 | Slit3 | Atp2b1 | Kcnq5 | Nrg1 | Kcnd2 | 6530403H02Rik | Zswim6 | Prkcb | Pard3 | Anks1b | Alcam | Pdzd2 | Mctp1 | Hs6st3 | Itpr1 | Zfp385b | Gprin3 | Gpr158 | Dgki | Pbx3 | Myt1l | Elmod1 | Ppp1r9a | Actn2 |
| 2 | 2,282 | - | - | Meg3 | Snhg11 | Usp29 | Ahi1 | Gnas | C130073E24Rik | Grid2 | Dscam | Nova1 | Unc5d | Rmst | 5330434G04Rik | Cep112 | Gm45455 | Gm45341 | Cadm1 | Pcdh15 | Snhg14 | Nhs | A330076H08Rik | A230057D06Rik | Tro | Ttc3 | Rasgrf1 | Frmd4a | Asic2 | Lhfpl3 | Dpp6 | Grb10 | Lsamp | Rian | Tshz2 | Agbl4 | Tnrc6a | Gm26871 | Xkr6 | Camta1 | Brinp3 | Tmem178b | Prkg1 | Baiap3 | Grik1 | Kcnq1ot1 | Amy1 | Map2 | Syn3 | Aif1l | Cplane1 | Kcnip1 | Galntl6 |
| 3 | 1,202 | - | - | Ntng1 | Nxph1 | Fgf13 | Inpp4b | Rnf220 | Lhfpl3 | Gm32647 | Synpo2 | Rmst | Meg3 | Tcf7l2 | Kcnc2 | Tox | Ralyl | Hdac9 | Tox3 | Vav3 | Kcnip4 | Cit | Unc5c | Rab3c | Nell1 | Cpne7 | Zfhx3 | Nrxn1 | Rims2 | Cep112 | Lrfn5 | Fgf12 | Ptprm | Plcb4 | Tenm1 | Celf4 | Elavl2 | Rian | Epha5 | Gm20754 | Marchf1 | Ccdc136 | Robo1 | Cpne4 | Zfp804b | Arhgap24 | Slc17a6 | Prr16 | Khdrbs2 | Rims1 | Oxr1 | Tmcc3 | Nalf1 |
| 4 | 1,149 | - | - | Hs3st4 | Zfpm2 | Dpp10 | Etl4 | Khdrbs3 | Frmpd4 | Cdh18 | Pde4d | Vxn | Garnl3 | Pde1a | Nos1ap | Arpp21 | Fut9 | 4930551E15Rik | Ptprd | Kcnh7 | Dlc1 | Chsy3 | Tle4 | Nfib | A830018L16Rik | Htr1f | Slc8a1 | Slc1a2 | Csmd1 | Dmd | Pcdh9 | Ano3 | Nrg3 | Tmem178 | Dlg2 | Mmp16 | Nav3 | Ext1 | Adcy2 | Pak5 | Ptk2 | Ryr2 | 4930578G10Rik | Sv2b | Gm17167 | Mast4 | Large1 | Lrp1b | Sox5 | Cdh11 | Me3 | Mctp1 | Grik3 |
| 5 | 1,037 | DEGLU1 | DEGLU2 | Ntng1 | Synpo2 | Kcnip4 | Vav3 | Cit | Kcnc2 | Cacna1c | Hdac9 | Robo1 | Ptpn3 | Plekhg1 | Inpp4b | Ptpn4 | Ildr2 | Ccdc136 | Nell1 | Adarb1 | Tcf7l2 | Lef1 | Plcb4 | Frmd4a | Zmat4 | Fgf13 | Phactr2 | Sh3d19 | Tanc1 | Rims2 | Clmn | Cpne7 | Xkr4 | Shc3 | Lrch1 | Rora | Galnt17 | Lrrc7 | Rnf220 | Fryl | Mctp2 | Zfhx3 | Gabbr2 | Rgs7 | Adcy8 | Gm20754 | Apbb2 | Ctif | Grm1 | Amotl1 | Srrm4 | Pakap | Nrxn1 |
| 6 | 979 | - | - | Meis2 | Rarb | Rgs9 | Phactr1 | Pbx3 | Pde7b | Gm10754 | Adcy5 | Cacnb2 | Caln1 | Dgkb | Plcb1 | Foxp1 | Slc4a4 | Gnal | Zbtb20 | Kcnab1 | Zswim6 | Dach1 | Pard3 | Xist | Ryr3 | Unc13c | 6530403H02Rik | Pde10a | Cacna2d3 | Adamts3 | Qk | Gprin3 | Alcam | Prkd1 | Ppp3ca | Ssbp2 | Igsf11 | Gng7 | Atp2b1 | Camk4 | Strn | Grm5 | Pcp4 | Stox2 | Pdzd2 | Lrrk2 | Trpm3 | Ppp1r9a | Bcl11b | Kcnq5 | Baiap2 | Son | Neto1 |
| 7 | 949 | - | - | Ptprd | Pdzrn3 | Mef2c | R3hdm1 | Cdh12 | Kcnh7 | Nav3 | Car10 | Arpp21 | Cdh10 | Fat3 | Kcnt2 | Gm49685 | Oxr1 | Pex5l | Dpp10 | Fhod3 | Satb2 | Khdrbs3 | Cnksr2 | Mical2 | Kcnh5 | Unc5d | Grin2a | Pcdh15 | Sv2b | Agbl4 | Kalrn | Ryr2 | Rims1 | Tspan5 | Schip1 | A830036E02Rik | Ntm | Nol4 | Nwd2 | Sidt1 | Ptprk | Grm3 | Celf2 | Syt1 | Pde1a | Tmem132d | Prr16 | Nrcam | Dmd | Cacna2d1 | Ext1 | Snap25 | Mapk10 |
| 8 | 691 | - | - | Grip1 | Tcf4 | Dlgap1 | Erbb4 | Kcnmb2 | Galntl6 | Nxph1 | Kcnip1 | Hcn1 | Frmd5 | Grik1 | Sox6 | Xkr4 | Zfp536 | Dlgap2 | Pam | Col19a1 | Elavl2 | Kcnc2 | Rbms3 | Ptprm | Ptchd4 | Sh3rf3 | Kcnc1 | Alk | Maf | Limch1 | Etl4 | Astn2 | Ubash3b | Cadps | Oxr1 | C130071C03Rik | Npas3 | Klf12 | Zeb2 | Dlx6os1 | Thrb | Cntnap2 | Gad2 | Sox2ot | Gad1 | Utrn | Adra1a | Enox1 | Dner | Osbpl3 | Rasgrf2 | Cntnap4 | Nhs |
| 9 | 687 | - | - | Opcml | Satb2 | Ptprk | Dpp10 | Aopep | Nav3 | Tmem132d | Cadps | Khdrbs3 | Cdh9 | Pcsk2 | Clstn2 | Csmd2 | Ppm1e | Ptprt | Schip1 | Ext1 | Gm49678 | Kalrn | Ryr2 | Sv2b | Arpp21 | Nell2 | Slc24a2 | Nrcam | Syt1 | Chrm3 | Mef2c | Sdk1 | Sorcs3 | Kcnt2 | Tnr | Zeb2 | Syn3 | Sorbs2 | Galnt14 | Erc2 | Rgs6 | Kcnip4 | Csgalnact1 | Cnksr2 | Wdr17 | Etl4 | Runx2 | Bmpr1b | Vxn | Pde1a | Nwd2 | Ldb2 | Kcnj6 |
| 10 | 584 | MFOL2 | MOL1 | Mobp | Pcdh9 | Mbp | Plp1 | St18 | Zfp536 | Pde4b | Map7 | Plcl1 | Tspan2 | Qk | Tmeff2 | Dock10 | Mog | Phlpp1 | Zeb2 | St6galnac3 | Septin7 | Kndc1 | Nkain2 | Malat1 | Sytl2 | Daam1 | Cdh19 | Mag | Ano4 | Cdc37l1 | Plekha1 | Klhl2 | Tmod2 | Ccp110 | Slc24a2 | Rnf220 | Exoc6b | Ugt8a | Septin4 | Gjc3 | 1700047M11Rik | Phldb1 | Enpp2 | Cldn11 | Pak1 | Erbb4 | Erbin | Nfasc | Gm16168 | Bin1 | Hipk2 | Opalin | Ppp1r16b |
| 11 | 577 | - | - | Zbtb20 | Nfia | Npas3 | Atp1a2 | Msi2 | Maml2 | Slc1a3 | Slc1a2 | Apoe | Qk | Sparcl1 | Sox6 | Plpp3 | Ptprz1 | Mertk | Gpc5 | Dock1 | Son | Cst3 | Gm3764 | Cpe | Lpp | Pard3b | Glul | Prex2 | Mt1 | Trpm3 | mt-Co1 | mt-Co3 | Bcan | Mir99ahg | Htra1 | Nckap5 | Hdac8 | Plce1 | Dtna | Kank1 | Farp1 | Macf1 | Mt2 | Glis3 | Itpr2 | Nfib | Slc39a12 | Lama2 | Cmss1 | Hnrnpa2b1 | Pik3r1 | Paqr8 | Phka1 |
| 12 | 561 | - | - | Mef2c | Pdzrn3 | Tafa1 | Enpp2 | Rgs6 | Col19a1 | Gpc6 | Cadm2 | Sorbs2 | Opcml | Chrm3 | Dlgap2 | Kcnh7 | Nav3 | Rasgrf2 | Camk2a | Lingo2 | Rasal2 | Nwd2 | Adcy2 | Csmd1 | Il1rapl1 | Pparg | Cacna2d1 | Ryr2 | Sphkap | Prkca | Grin2a | Gria3 | Cnksr2 | Lrrtm4 | Mlip | Cacng3 | Kctd16 | Tmem132d | R3hdm1 | Dpp10 | Slc9a9 | Erc2 | Pam | Ptprk | Kalrn | Schip1 | Nectin3 | Dlg1 | Celf2 | Satb2 | Kcnip4 | Car10 | Cux2 |
| 13 | 400 | - | - | Trpc4 | Dgkg | Slc8a1 | Nkain3 | Gria1 | Myo5b | Grm5 | Mdga2 | Prdm16 | Usp29 | Gria2 | Sntg1 | Ppm1e | Ripor2 | Nalf1 | Meg3 | Trpm3 | Lncpint | Tmem178b | Fgf12 | Xkr6 | Arhgap6 | Dpp6 | Tenm2 | Ano1 | Trio | Dlg2 | Nhs | Adgrb3 | Lrrfip1 | Tcerg1l | Ryr2 | Cadm1 | Shisa6 | Lzts1 | Slc35f1 | Lingo2 | Sox2ot | Nr3c2 | Dock10 | Tro | Slco3a1 | Dlgap1 | Gabra2 | Cacna2d2 | Epha5 | Col25a1 | Cdc42bpa | Dip2c | Slc24a3 |
| 14 | 317 | - | - | Zbtb20 | Galnt17 | Epha7 | Nr3c2 | Gria1 | Grin2a | Ppfia2 | Tafa2 | Plxna4 | Shisa6 | Gm20754 | Tcf4 | Sphkap | Clstn2 | Nell2 | Ryr2 | Wipf3 | Prkce | Dlgap1 | Kcnj6 | Cyp7b1 | Nebl | Ak5 | Kalrn | Camk2a | Zfpm2 | Nfib | Ahcyl2 | St6galnac5 | Maml2 | Dab1 | Cacna1e | Dock4 | Nrp1 | Epha6 | Sema5a | Btbd9 | Ppp3ca | Prkca | Tmem108 | Erc2 | Zeb2 | Tanc1 | Cadm2 | Epha4 | Gria2 | Rfx3 | Lgi1 | Ppm1e | Plcl1 |
| 15 | 281 | MFOL1 | MFOL2 | Plp1 | St18 | Mbp | Qk | Mobp | Tmeff2 | Plcl1 | Tspan2 | Map7 | Zfp536 | Pcdh9 | Zeb2 | Mag | Prr5l | Septin7 | Cdc37l1 | Dock10 | Pde4b | Mog | St6galnac3 | Gm16168 | Phlpp1 | Ugt8a | Cdh19 | Gjc3 | Erbb4 | Nkain2 | Ccp110 | Phldb1 | Cldn11 | Bcas1 | Enpp2 | Tmod2 | Kndc1 | Ppp1r16b | Ptprk | Sox2ot | 1700047M11Rik | Plekha1 | Ppp2r3a | Sytl2 | Ano4 | Rnf220 | Fnbp1 | Daam1 | Mal | Hipk2 | Septin4 | Klhl2 | Creb5 |
| 16 | 275 | TEGLU4 | TEGLU10 | Pex5l | Tafa1 | Dpp10 | Hcn1 | Ldb2 | Gm49678 | Pde1a | Ppm1e | Ndst3 | Nos1ap | Sox5 | Opcml | Ralyl | Nfib | Kcnh7 | Dab1 | Mical2 | Rapgef5 | Gm19410 | Sv2b | Htr1f | Mef2c | Khdrbs3 | Gm2164 | Tox | Gm12394 | Gm17167 | Iqgap2 | Gria3 | Grin2a | Miat | Arpp21 | Fam135b | Tspan5 | Efr3a | Ctnna2 | Khdrbs2 | Sorl1 | Cadps2 | Sgcz | Schip1 | Magi2 | Gm30382 | Mpped1 | Fmn1 | Ano4 | Tmem132d | Adcy2 | Vxn | Pcsk5 |
| 17 | 240 | - | - | Esrrg | Gm13629 | Lrrc4c | Gria4 | Ubash3b | Zfp804a | Nalf1 | Slc35f1 | Elavl4 | Galntl6 | Kcnmb2 | Msi2 | Camta1 | Meg3 | C130073E24Rik | Agbl4 | Tenm1 | Rbms3 | Kcnip1 | Chrm2 | Nhs | Myo16 | Gm45455 | Slc44a5 | Inpp4b | Ano4 | Gad2 | Asic2 | Cdh13 | Camk2d | Tmem178b | Klf12 | Gm45341 | Fign | Grip1 | Stard9 | Zmat4 | Btbd11 | Dlgap1 | Scn1a | Osbpl9 | Mmp16 | Snhg14 | Hs3st5 | Tmem108 | 5330434G04Rik | Rab3c | B130024G19Rik | Atp8a2 | Lhfpl3 |
| 18 | 230 | PER2 | PER1 | Flt1 | Adgrl4 | Actb | Sparc | Bsg | Slc2a1 | Rgs5 | Tmsb4x | Nostrin | Cldn5 | Sptbn1 | Ptprb | Abcb1a | Slco1c1 | Epas1 | Slco1a4 | Sgms1 | Eng | Adgrf5 | Igfbp7 | Ccdc141 | Clic4 | Spock2 | Pglyrp1 | Pltp | Calm1 | Myl12a | Col4a1 | Cmtr2 | Ubb | Nfkbia | Ly6c1 | Heg1 | Igf1r | Id1 | Pdgfd | Fn1 | Rpl38 | S1pr1 | Utrn | Cmss1 | Ctla2a | Itm2a | Ahnak | Gpcpd1 | Selenop | Mecom | Apcdd1 | Syt2 | mt-Co1 |
| 19 | 215 | NFOL1 | COP1 | 9630013A20Rik | Nfasc | Qk | Tns3 | St18 | 9530059O14Rik | Mbp | Plp1 | Nckap5 | Fyn | Itpr2 | Zeb2 | Sema5a | Dock9 | Bcas1 | Kank1 | Map4k4 | Fmnl2 | Dnm3 | Cdh20 | Tmem163 | Sirt2 | Pkp4 | Cnksr3 | Sox2ot | Ugt8a | Tcf7l2 | Sema4d | Etv6 | Rictor | Tmeff2 | Slc44a1 | Mical3 | Plcl1 | 2610035D17Rik | Sema6a | Erbb4 | Mag | Gng12 | Pik3r3 | Ephb1 | Rtn4 | Ankrd28 | Elovl7 | Luzp2 | Xist | Baz2b | Lcorl | Gjc3 | Pcdh7 |
| 20 | 178 | - | - | Msi2 | Nrp2 | Rbms3 | Pbx1 | Mgat4c | Trpm3 | Cdk14 | Snhg11 | Nrg3 | Asic2 | Slit2 | Dpp6 | Car10 | Pard3b | Apba1 | Kcnh5 | Sema6d | Cep112 | Thsd7b | Vav3 | D130079A08Rik | Tenm3 | Syt9 | Zfp608 | Ccser1 | Kcnip1 | Scube1 | Cntnap2 | Lhfpl3 | Nwd2 | Fstl5 | Kctd8 | Cpne4 | C130073E24Rik | Pld5 | Gria1 | Inpp4b | Tmem117 | Opcml | Rere | Lsamp | Pcdh9 | Kcnh8 | Mtss1 | Kitl | Lcorl | Tenm2 | Ebf3 | Gm45455 | Lrrc3b |
| 21 | 98 | - | - | Tshz2 | Vwc2l | Frmpd4 | Adcy2 | Olfm3 | Etl4 | Nrg3 | Kcnt2 | Mgat4c | Ptprd | Chsy3 | Fut9 | Cdh18 | Hs3st4 | Mmp16 | Grik1 | Gm17167 | Gm12394 | 4930578G10Rik | Efr3a | Rgs6 | Cpne4 | Dcc | Prkca | Unc13b | Tle4 | Scai | Nav3 | A830018L16Rik | Gria4 | Slc1a2 | Strbp | Lrrc4c | Ryr2 | Nrxn1 | Cntn6 | Trabd2b | Sh3rf3 | Gm28905 | Sox5 | Dync1i1 | Cdh11 | Dscam | Grm8 | Klhl32 | Pid1 | Spon1 | Dmd | Tox | 4930551E15Rik |
| 22 | 82 | - | - | Cntn6 | Gm32647 | Slc24a3 | Zfp804b | Prr16 | Frmd4a | Nell1 | Dlgap1 | Cntnap2 | Alk | Tenm2 | Tenm4 | Cacna1c | Rbfox1 | Elavl2 | Ntng1 | Nxph1 | Kcnmb2 | Rgs6 | Kcnc2 | Slc44a5 | Inpp4b | Astn2 | Brinp3 | Lsamp | Adarb1 | Kcnip4 | Megf11 | Hdac9 | Cntn4 | Tmem108 | Vwc2l | Kcnn2 | Gabrb1 | Mctp2 | Slit2 | Stxbp5l | Cdh12 | Meg3 | Rorb | Nrxn1 | Mgat4c | Cit | Plekhg1 | Gm49685 | Gm13629 | Magi2 | Kirrel3 | Prox1 | Sntb1 |
| 23 | 74 | - | - | Csmd1 | Celf2 | Dpp10 | Arpp21 | Gm10754 | Cnksr2 | Rarb | Ano3 | Phactr1 | Rgs9 | Sv2b | Dach1 | 6530403H02Rik | Foxp1 | R3hdm1 | Dlgap2 | Etl4 | Khdrbs3 | Mef2c | Cacna2d3 | Homer1 | Itpr1 | Pde1a | Kcnh7 | Adcy5 | Meis2 | Gm12394 | Atp2b1 | Satb2 | Dlg2 | Nrg1 | Me3 | Ptprd | 4930578G10Rik | Camk4 | Vxn | Pak5 | Prkcb | Ryr2 | Cacnb2 | Gm15155 | Grm3 | Kcnq5 | Nav3 | Kcnab1 | Lmo3 | Cadm2 | Zswim6 | Flrt2 | Opcml |
Key Metrics
| Total Reads | 387,095,153 | Reads Above Min. Length | 381,333,704 |
| Reads w. Valid Barcodes | 305,828,862 | Reads Mapped to Transcripts | 240,364,542 |
| % Reads Mapped | 78.59 | % Reads in Cells | 62.57 |
| Cells | 23,762 | Mean Reads Per Cell | 16,291 |
| Duplication Rate | 1.681 | % Sequencing Saturation | 40.51 |
| Transcripts in Cells | 114,952,766 | Median Transcripts Per Cell | 4,031 |
| Genes Expressed in Cells | 29,774 | Median Genes Per Cell | 1,823 |
| % Mito. Transcripts in Cells | 0.07 |
Clustering
Graph Based (24 Clusters)
| Cluster | Cell Count | Cell Type (mouse-whole-brain) | Feature Rank |
| Primary | Secondary | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 |
| 1 | 4,231 | MSN1 | MSN2 | Phactr1 | Rarb | Cacna2d3 | Rgs9 | Foxp1 | Ryr3 | Dgkb | Pde10a | Kcnab1 | Grm5 | Adcy5 | Meis2 | Gm10754 | Pde7b | Cacnb2 | Celf2 | Caln1 | Camk4 | Ppp3ca | Kcnq5 | Fgf14 | Slit3 | Spock3 | Dcc | Dach1 | Nrg1 | Gnal | Atp2b1 | Plcb1 | Mctp1 | Slc4a4 | Hs6st3 | Zfp385b | Kcnd2 | Prkcb | 6530403H02Rik | Lrrc7 | Itpr1 | Myt1l | Anks1b | Alcam | Gpr158 | Dgki | Pdzd2 | Dlg2 | Robo2 | Gprin3 | Zswim6 | Elmod1 | Cntn5 |
| 2 | 3,278 | - | - | Meg3 | Snhg11 | Usp29 | Ahi1 | Unc5d | Snhg14 | Dscam | Grid2 | 5330434G04Rik | Gnas | C130073E24Rik | Cep112 | Rian | Agbl4 | Pcdh15 | Rmst | A230057D06Rik | Ttc3 | Gm26871 | Asic2 | Nova1 | Rasgrf1 | A330076H08Rik | Gm45455 | Frmd4a | Dpp6 | Nhs | Tro | Cadm1 | Gm45341 | Cntnap2 | Lingo2 | Ccser1 | Nalf1 | Galntl6 | Lhfpl3 | Kcnq1ot1 | Grb10 | Camta1 | Brinp3 | A230006K03Rik | Cdh18 | Kcnb2 | Tshz2 | Celf4 | Xkr6 | Marchf1 | Tenm2 | Peg3 | Gria4 |
| 3 | 2,482 | DEGLU1 | DEGLU3 | Ntng1 | Inpp4b | Kcnip4 | Kcnc2 | Synpo2 | Cit | Hdac9 | Fgf13 | Vav3 | Nell1 | Nxph1 | Cacna1c | Rims2 | Robo1 | Tcf7l2 | Cpne7 | Ccdc136 | Zfhx3 | Rnf220 | Meg3 | Gm20754 | Ptpn3 | Plcb4 | Fgf12 | Rab3c | Rims1 | Tenm1 | Nrxn1 | Ildr2 | Zfp804b | Lhfpl3 | Tox | Phactr2 | Xkr4 | Gm32647 | Adarb1 | Nalf1 | Ptprm | Ptpn4 | Tox3 | Zmat4 | Frmd4a | A230006K03Rik | Rgs7 | Rian | Elavl2 | Galnt17 | Zfp804a | Srrm4 | Slc17a6 |
| 4 | 2,152 | MOL1 | MFOL2 | Pcdh9 | Mobp | Map7 | Plp1 | Pde4b | Mbp | Plcl1 | Zfp536 | Dock10 | St18 | Tmeff2 | Nkain2 | Slc24a2 | St6galnac3 | Malat1 | Phlpp1 | Tspan2 | Qk | Mog | Zeb2 | Septin7 | Prr5l | Cdc37l1 | Rnf220 | Ano4 | Tmod2 | Ptprk | Ccp110 | Exoc6b | Edil3 | Klhl2 | Kndc1 | Mast4 | Mag | Cdh19 | Daam1 | Enpp2 | Frmd5 | Magi2 | Sytl2 | Fnbp1 | Plekha1 | Gm16168 | D7Ertd443e | Ppp2r3a | Unc5c | Cldn11 | Erbb4 | Mal | Ppp1r16b |
| 5 | 1,317 | TEGLU3 | TEGLU2 | Hs3st4 | Dpp10 | Zfpm2 | Etl4 | Khdrbs3 | Frmpd4 | Cdh18 | Pde4d | Arpp21 | Pde1a | Garnl3 | Kcnh7 | Nos1ap | Ptprd | Fut9 | Vxn | 4930551E15Rik | A830018L16Rik | Chsy3 | Htr1f | Dlc1 | Csmd1 | Ano3 | Nrg3 | Dlg2 | Nav3 | Tle4 | Dmd | Ryr2 | Sv2b | Adcy2 | Slc8a1 | Mmp16 | Mctp1 | Tmem178 | Nfib | Gria3 | Large1 | Me3 | Kalrn | Gm17167 | 4930578G10Rik | Slc1a2 | Syt1 | Ext1 | Kcnma1 | Grm8 | Lrp1b | Gm12394 | Rims1 |
| 6 | 1,279 | - | - | Qk | Mbp | Plp1 | Zbtb20 | Slc4a4 | Meis2 | Mobp | Rgs9 | Rarb | Dgkb | Gm10754 | Pbx3 | Slc1a3 | Lama2 | Erbb4 | Adcy5 | Phactr1 | Nfia | Gpc5 | Plcl1 | Dock10 | Xist | Plpp3 | Sox2ot | Atp1a2 | Dach1 | Pde7b | Prkd1 | Cdh19 | Fth1 | Npas3 | Slc1a2 | St18 | Igsf11 | Ryr3 | Son | Gm3764 | Zswim6 | mt-Co3 | Trpm3 | Foxp1 | Cacna2d3 | 6530403H02Rik | Mertk | Kcnab1 | Pde4b | Maml2 | Sox6 | Foxo1 | mt-Co1 |
| 7 | 1,046 | ACTE1 | ACTE2 | Slc1a2 | Gm3764 | Slc1a3 | Msi2 | Npas3 | Atp1a2 | Gpc5 | Zbtb20 | Nfia | Mertk | Ptprz1 | Dtna | Cpe | Mir99ahg | Prex2 | Sparcl1 | Plpp3 | Hdac8 | Farp1 | Rora | Slc4a4 | Nrxn1 | Trpm3 | Son | Lama2 | Paqr8 | Htra1 | Glul | Macf1 | Maml2 | Bcan | Trps1 | Sox6 | Qk | Ntm | Apoe | Gabrb1 | Tnik | Lsamp | Trim9 | Gm6145 | Mapk4 | Ttyh1 | Ntrk2 | Dock1 | Luzp2 | Nhsl1 | Phka1 | Pard3b | Acsl3 |
| 8 | 929 | TEGLU8 | TEGLU10 | Ptprd | Mef2c | Pdzrn3 | Kcnh7 | R3hdm1 | Cdh12 | Arpp21 | Nav3 | Car10 | Dpp10 | Fat3 | Kcnt2 | Gm49685 | Oxr1 | Fhod3 | Khdrbs3 | Cdh10 | Pex5l | Cnksr2 | Kcnh5 | Grin2a | Sv2b | Unc5d | Rims1 | Satb2 | Agbl4 | Kalrn | Celf2 | Ryr2 | Pcdh15 | Mical2 | A830036E02Rik | Syt1 | Schip1 | Sidt1 | Pde1a | Nwd2 | Snap25 | Prr16 | Cacna2d1 | Nol4 | Kcnb2 | Fstl4 | Tmem132d | Mapk10 | Ntm | Tspan5 | Dlgap2 | Dmd | Hs6st3 |
| 9 | 842 | - | - | Grip1 | Tcf4 | Dlgap1 | Galntl6 | Kcnmb2 | Erbb4 | Nxph1 | Kcnip1 | Hcn1 | Dlgap2 | Kcnc2 | Xkr4 | Rbms3 | Elavl2 | Grik1 | Cadps | Etl4 | Pam | Col19a1 | Sh3rf3 | Cntnap2 | Ptchd4 | Ptprm | Maf | Frmd5 | Kcnc1 | Oxr1 | Sox6 | Alk | Astn2 | Thrb | C130071C03Rik | Klf12 | Ubash3b | Dlx6os1 | Zfp536 | Osbpl3 | Gad2 | Gria4 | Snhg11 | Rasgrf2 | Scn1a | Sntg1 | Fgf12 | Cntnap4 | Nrxn3 | Npas3 | Limch1 | Gad1 | Nhs |
| 10 | 833 | TEGLU11 | TEGLU20 | Dpp10 | Opcml | Satb2 | Nav3 | Khdrbs3 | Cadps | Clstn2 | Arpp21 | Pcsk2 | Kalrn | Tmem132d | Aopep | Ryr2 | Cdh9 | Mef2c | Schip1 | Sv2b | Syt1 | Chrm3 | Ppm1e | Gm49678 | Nell2 | Csmd2 | Kcnip4 | Kcnt2 | Ext1 | Etl4 | Ptprt | Ptprk | Erc2 | Sorbs2 | Sorcs3 | Cnksr2 | Nrcam | Grin2a | Sdk1 | Rgs6 | Wdr17 | Kcnh7 | R3hdm1 | Pde1a | Runx2 | Tnr | Kcnh1 | Ldb2 | Kctd16 | Msra | Syn3 | Galnt14 | Htr1f |
| 11 | 801 | NFOL1 | COP1 | Qk | 9630013A20Rik | Tns3 | Bcas1 | Nfasc | St18 | Fyn | Zeb2 | Dnm3 | 9530059O14Rik | Itpr2 | Plp1 | Nckap5 | Mbp | Kank1 | Sirt2 | Slc44a1 | Sema5a | Pcdh7 | Cdh20 | Dock9 | Fmnl2 | Erbb4 | Lcorl | Etv6 | Map4k4 | Pkp4 | Xist | Luzp2 | Sox2ot | Tmem163 | Ankrd28 | Cnksr3 | Rictor | Ankrd44 | Tcf7l2 | Ugt8a | Gjc3 | Plcl1 | Tmeff2 | Gm16168 | Mical3 | Slc22a23 | Enpp6 | Cdc37l1 | Pik3r3 | 2610035D17Rik | Ust | Pde4b | Mpzl1 |
| 12 | 708 | PER2 | PER1 | Actb | Sparc | Tmsb4x | Cmss1 | Calm1 | mt-Co1 | mt-Co3 | Bsg | Ubb | Syt2 | Cmtr2 | Hsp90ab1 | Rpl38 | Rps29 | Ubc | Flt1 | mt-Atp6 | Adgrl4 | Sptbn1 | Rgs5 | Gnai2 | Sgms1 | Tuba1a | Epas1 | Slc2a1 | Hspa8 | Eef1a1 | Igfbp7 | mt-Co2 | Myl6 | Actg1 | Hbb-bs | Igf1r | Sparcl1 | Ptma | Ptprb | Nfkbia | Rpl37a | Hba-a2 | Clic4 | Cst3 | Pabpc1 | Hba-a1 | Ahnak | Utrn | Selenop | Cldn5 | Nostrin | Slco1a4 | Cdk8 |
| 13 | 628 | TEGLU7 | TEGLU17 | Mef2c | Tafa1 | Pdzrn3 | Rgs6 | Col19a1 | Kcnh7 | Chrm3 | Dlgap2 | Sorbs2 | Nav3 | Gpc6 | Cadm2 | Lingo2 | Opcml | Rasgrf2 | Grin2a | Csmd1 | Ryr2 | Camk2a | Dpp10 | Cacna2d1 | Rasal2 | Cnksr2 | Enpp2 | Sphkap | Kctd16 | Nwd2 | Il1rapl1 | Lrrtm4 | Adcy2 | Gria3 | Pparg | Mlip | Kcnip4 | Kalrn | Erc2 | Celf2 | Tmem132d | R3hdm1 | Cacng3 | Schip1 | Prkca | Slit3 | Car10 | Lrfn5 | Pam | Pcsk2 | Satb2 | Fstl4 | Nell2 |
| 14 | 538 | - | - | Trpc4 | Dgkg | Nkain3 | Gria1 | Slc8a1 | Grm5 | Myo5b | Mdga2 | Sntg1 | Tenm2 | Meg3 | Nalf1 | Usp29 | Gria2 | Fgf12 | Prdm16 | Ripor2 | Ppm1e | Trpm3 | Lncpint | Lingo2 | Dpp6 | Tmem178b | Dlg2 | Ryr2 | Lrrfip1 | Adgrb3 | Xkr6 | Nrxn3 | Trio | Ryr3 | Gabra2 | Shisa6 | Arhgap6 | Nhs | Dlgap1 | Slc35f1 | Tcerg1l | Cadm1 | Ano1 | Galnt13 | Tro | Cdr1os | Grm8 | Epha6 | Epha5 | Rbfox2 | Focad | Nr3c2 | Unc5d |
| 15 | 506 | - | - | Lhfpl3 | Ptprz1 | Xylt1 | Tnr | Sox6 | Vcan | Epn2 | Pcdh15 | Npas3 | Dscam | Zeb1 | Adarb2 | Gm4876 | Lrrc4c | Gpc5 | Maml2 | Sox2ot | Brinp3 | Sgcd | Luzp2 | Pdgfra | Ptprt | Sox5 | Sema6d | Nxph1 | Lsamp | Dpyd | Slc35f1 | Arhgap31 | Megf11 | Zfp462 | Erbb4 | Nrxn1 | Chst11 | Nckap5 | Usp24 | Itpr2 | Tmem132d | Mir9-3hg | Csmd3 | Nav3 | Marchf1 | Pid1 | Qk | Cspg4 | Mmp16 | Nlgn1 | Gm3764 | Nfia | Dscaml1 |
| 16 | 491 | - | - | Zbtb20 | Epha7 | Galnt17 | Gria1 | Nr3c2 | Tafa2 | Ppfia2 | Plxna4 | Grin2a | Sphkap | Gm20754 | Dab1 | Dlgap1 | Nell2 | Ryr2 | Clstn2 | Prkce | Kalrn | Ahcyl2 | Shisa6 | Kcnj6 | Wipf3 | Rfx3 | Tcf4 | Zfpm2 | Ppp3ca | Cyp7b1 | Nebl | Erc2 | Cacna1e | Lrrtm4 | Cadm2 | Camk2a | Maml2 | Ak5 | Sema5a | Epha6 | Mctp1 | Btbd9 | Nfib | Gria2 | Tmem108 | Nrp1 | St6galnac5 | Ppm1e | Ntrk3 | Dlgap2 | Dgkh | Ccdc85a | Nrg3 |
| 17 | 300 | - | - | Asic2 | Tenm3 | Grm8 | Ebf2 | Nrg3 | Clstn2 | Nrp2 | Epha3 | Sgcd | Snhg11 | Ntm | Zfhx3 | Shisa6 | Msi2 | Ebf3 | Ptprd | Cntnap5a | Plcb4 | Meg3 | Mgat4c | B130024G19Rik | Sema5a | Cacna2d1 | Ank3 | Sorcs3 | C130073E24Rik | Ntng1 | Prkg1 | Ctnna2 | Sema3a | Sema6d | Pcdh9 | Khdrbs2 | Rbms3 | Pbx1 | Schip1 | Csmd1 | Ak5 | Eps8 | Lhfpl3 | Zfhx4 | Tshz2 | Adgrl3 | Rasal2 | Cdk14 | Gm45455 | Luzp2 | Fstl5 | Inpp4b | Fam189a1 |
| 18 | 287 | - | - | Nwd2 | Trpm3 | Kctd8 | Kcnma1 | Msi2 | Apba1 | Cntnap2 | Rbms3 | Cpne4 | Vav3 | Cacna1e | Pbx1 | Robo1 | Syt9 | D130079A08Rik | Scube1 | Dpp6 | Cadps2 | Car10 | Cdk14 | Fat3 | Slit2 | Mgat4c | Thsd7a | Nrp2 | Pam | Gm29478 | Gfra1 | Dach1 | Kcnip1 | Rgs6 | Grip1 | Gria1 | Nrg3 | Gabbr2 | St6galnac5 | Tcf7l2 | Snhg11 | Pde1a | Tmem117 | Cnnm2 | Tafa1 | Gabbr1 | D130009I18Rik | Kcnd2 | Pde4d | Galnt13 | Kcnh5 | Ano1 | Tenm2 |
| 19 | 263 | - | - | Meis2 | Nrxn3 | Foxp2 | Plcb1 | Dpp6 | Phactr1 | Gabrg3 | Trpm3 | Pbx3 | Robo1 | Tenm4 | Myt1l | Grip1 | Slc35f1 | Grin2a | Alk | Necab1 | Tshz1 | Gpc6 | Pcdh15 | Adarb2 | Neto1 | Celf4 | Galntl6 | Gm1604a | Cacna1c | Rbms3 | Cacnb2 | Asic2 | Ssbp2 | Rgs9 | Runx1t1 | Kazn | Gad2 | Olfm3 | Otof | Gria1 | Gramd1b | Sema3e | Gm49906 | Pde4b | Sorcs2 | Adamts3 | Pbx1 | Sema6d | Caln1 | Slc2a13 | Unc13c | Zswim6 | Ccser1 |
| 20 | 260 | TEGLU4 | TEGLU10 | Tafa1 | Pex5l | Dpp10 | Hcn1 | Ldb2 | Pde1a | Gm49678 | Ppm1e | Nos1ap | Ndst3 | Kcnh7 | Dab1 | Ralyl | Htr1f | Khdrbs3 | Rapgef5 | Sox5 | Gm2164 | Gm19410 | Arpp21 | Opcml | Gm12394 | Iqgap2 | Sv2b | Gria3 | Grin2a | Mical2 | Tox | Gm17167 | Mef2c | Sgcz | Khdrbs2 | Miat | Fam135b | Gm30382 | Tspan5 | Schip1 | Nfib | Dlgap1 | Ctnna2 | Sorl1 | Efr3a | Mpped1 | Pcsk5 | Camk2a | Cadps2 | Fmn1 | Tmem132d | Pde4d | Adcy2 |
| 21 | 219 | - | - | Kcnmb2 | Lrrc4c | Slc35f1 | Hs3st4 | Ubash3b | Fign | Esrrg | Zfp804a | Slc44a5 | Dlgap1 | Galntl6 | 4930551E15Rik | Gm13629 | Nalf1 | Kcnma1 | Fgf13 | Gria4 | Rgs6 | Ak5 | Kctd16 | Cdh13 | Gad2 | Tenm1 | Elavl4 | Marchf1 | B130024G19Rik | Grik2 | Meg3 | Nxph1 | Asic2 | Tmem108 | Agbl4 | Mmp16 | Scn3a | Zmat4 | C130073E24Rik | Egfem1 | Gabra3 | Inpp4b | Prkg1 | Vwc2 | Chrm2 | Myo16 | Rnf220 | Btbd11 | Tmem178b | Il1rapl1 | Camk2d | Il1rapl2 | Rab3c |
| 22 | 179 | EPEN | CHOR | Spag16 | Glis3 | Zbtb20 | Cfap44 | Maml2 | Dnah6 | Lrriq1 | Cfap69 | Dnah9 | Msi2 | Pacrg | Ccdc162 | Dnah11 | Spef2 | Cfap43 | Dnah7b | Nfia | Gm4876 | Agbl4 | Pard3b | Ak9 | 9530026P05Rik | Neat1 | Dnai4 | Cmss1 | Adgrv1 | Vwa3a | Spata17 | Cfap54 | Rfx3 | C230072F16Rik | Cfap299 | Spag6l | Nckap5 | Npas3 | Hydin | Fhad1 | Apoe | Wwox | Gm973 | Clu | Cmtr2 | Ak7 | Gas6 | Kif9 | Ccdc146 | Dbi | Syne1 | Plce1 | mt-Co3 |
| 23 | 120 | - | - | Tshz2 | Vwc2l | Adcy2 | Frmpd4 | Olfm3 | Chsy3 | Etl4 | Nrg3 | Mgat4c | Ptprd | Hs3st4 | Fut9 | Kcnt2 | Cdh18 | Lrrc4c | Mmp16 | Dcc | Prkca | Cntn6 | Cpne4 | Grik1 | Gria4 | Gm12394 | Rgs6 | Unc13b | Nav3 | Gm17167 | Strbp | Ryr2 | Prr16 | A830018L16Rik | Sh3rf3 | Cntn3 | Dync1i1 | 4930578G10Rik | Scai | Efr3a | Nrxn1 | Etv1 | Agbl4 | Tle4 | Pid1 | Tox | Gabrg3 | Ldb2 | Slc1a2 | Spon1 | Gm28905 | Cdh11 | Prickle1 |
| 24 | 73 | TEGLU11 | TEGLU10 | Dpp10 | Arpp21 | Celf2 | Gm10754 | Csmd1 | Sv2b | Ano3 | Rarb | Cnksr2 | Phactr1 | Kcnh7 | Khdrbs3 | Dlgap2 | Mef2c | Rgs9 | Etl4 | Cacna2d3 | Dach1 | Foxp1 | Atp2b1 | R3hdm1 | Nrg1 | Dlg2 | Pde1a | Cacnb2 | Ryr2 | 6530403H02Rik | Itpr1 | Ptprd | Gm15155 | Kalrn | Camk4 | Erc2 | Kctd16 | Kcnq5 | Me3 | Homer1 | Gm12394 | Meis2 | Nav3 | Grin2a | Prkcb | Adcy5 | Gria3 | Pcsk2 | 4930578G10Rik | Satb2 | Pde10a | Cacna2d1 | Kcnab1 |
Key Metrics
| Total Reads | 387,095,153 | Reads Above Min. Length | 381,333,704 |
| Reads w. Valid Barcodes | 305,828,862 | Reads Mapped to Transcripts | 240,364,542 |
| % Reads Mapped | 78.59 | % Reads in Cells | 67.09 |
| Cells | 30,091 | Mean Reads Per Cell | 12,864 |
| Duplication Rate | 1.679 | % Sequencing Saturation | 40.45 |
| Transcripts in Cells | 123,251,651 | Median Transcripts Per Cell | 3,284 |
| Genes Expressed in Cells | 29,871 | Median Genes Per Cell | 1,578 |
| % Mito. Transcripts in Cells | 0.08 |
Clustering
Graph Based (24 Clusters)
| Cluster | Cell Count | Cell Type (mouse-whole-brain) | Feature Rank |
| Primary | Secondary | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 |
| 1 | 4,439 | MSN1 | MSN2 | Phactr1 | Cacna2d3 | Rarb | Rgs9 | Ryr3 | Foxp1 | Pde10a | Dgkb | Kcnab1 | Grm5 | Celf2 | Cacnb2 | Gm10754 | Adcy5 | Meis2 | Caln1 | Camk4 | Pde7b | Kcnq5 | Ppp3ca | Fgf14 | Spock3 | Nrg1 | Slit3 | Dcc | Atp2b1 | Dach1 | Hs6st3 | Zfp385b | Mctp1 | Gnal | Lrrc7 | Myt1l | Dlg2 | Kcnd2 | Prkcb | 6530403H02Rik | Plcb1 | Gpr158 | Rbfox1 | Itpr1 | Anks1b | Cntn5 | Robo2 | Dgki | Gabrg3 | Alcam | Elmod1 | Pdzd2 | Erc2 |
| 2 | 3,582 | - | - | Meg3 | Snhg11 | Usp29 | Ahi1 | Snhg14 | Unc5d | Rian | Agbl4 | Dscam | Gm26871 | 5330434G04Rik | Cntnap2 | C130073E24Rik | Lingo2 | Asic2 | Rasgrf1 | Dpp6 | Grid2 | Cep112 | Ttc3 | Pcdh15 | A230057D06Rik | Nalf1 | Gnas | Galntl6 | Ccser1 | Tro | Frmd4a | Tenm2 | Gm45455 | Nhs | A230006K03Rik | A330076H08Rik | Rmst | Celf4 | Gm45341 | Nova1 | Cdh18 | Kcnb2 | Cdr1os | Cadm1 | Gria4 | Kcnq1ot1 | Cntnap5a | Grb10 | Tenm1 | Lrrtm4 | Ptprn2 | Peg3 | Grip1 |
| 3 | 3,411 | MOL1 | MFOL2 | Pcdh9 | Mobp | Plp1 | Map7 | Nkain2 | Mbp | Pde4b | Slc24a2 | Tmeff2 | Plcl1 | St18 | Zfp536 | Dock10 | Malat1 | St6galnac3 | Prr5l | Qk | Tspan2 | Zeb2 | Phlpp1 | Mog | Septin7 | Rnf220 | Cdc37l1 | Mast4 | Edil3 | Ptprk | Magi2 | Frmd5 | Ano4 | Tmod2 | Exoc6b | Klhl2 | Ccp110 | Unc5c | Fnbp1 | Mag | Enpp2 | Kndc1 | Gm16168 | Cdh19 | D7Ertd443e | Plekha1 | Daam1 | Sytl2 | Mal | Erbb4 | Ppp1r16b | Elmo1 | Cldn11 |
| 4 | 2,625 | ACTE1 | ACTE2 | Slc1a2 | Gpc5 | Slc1a3 | Npas3 | Dtna | Msi2 | Atp1a2 | Rora | Gm3764 | Cpe | Mertk | Slc4a4 | Zbtb20 | Nrxn1 | Sparcl1 | Prex2 | Trpm3 | Nfia | Ptprz1 | Ntm | Gabrb1 | Mir99ahg | Hdac8 | Son | Farp1 | Plpp3 | Tnik | Lsamp | Ntrk2 | Macf1 | Paqr8 | Lama2 | Htra1 | Trim9 | Trps1 | Ctnnd2 | Bcan | Mapk4 | Ttyh1 | Glul | Malat1 | Apoe | Gm6145 | Maml2 | Acsl3 | Qk | Sox6 | Slc39a12 | Phka1 | Luzp2 |
| 5 | 2,573 | DEGLU1 | DEGLU3 | Ntng1 | Kcnip4 | Kcnc2 | Inpp4b | Synpo2 | Cit | Hdac9 | Nell1 | Fgf13 | Vav3 | Cacna1c | Nxph1 | Robo1 | Rims2 | Meg3 | Cpne7 | Rims1 | Fgf12 | Ccdc136 | Gm20754 | Zfhx3 | Ptpn3 | Tcf7l2 | Rab3c | Tenm1 | Zfp804b | Nalf1 | Xkr4 | Ildr2 | Rian | A230006K03Rik | Rnf220 | Gm32647 | Adarb1 | Zmat4 | Zfp804a | Plcb4 | Lrfn5 | Rgs7 | Tox | Galnt17 | Lhfpl3 | Elavl2 | Ralyl | Phactr2 | Grm7 | Cntnap2 | Frmd4a | Srrm4 | Ptpn4 |
| 6 | 1,695 | TEGLU10 | TEGLU8 | Mef2c | Kcnh7 | Pdzrn3 | Ptprd | Dpp10 | R3hdm1 | Nav3 | Car10 | Cnksr2 | Grin2a | Cdh12 | Arpp21 | Celf2 | Ryr2 | Kalrn | Dlgap2 | Kcnt2 | Sv2b | Schip1 | Kctd16 | Cacna2d1 | Satb2 | Erc2 | Unc5d | Fstl4 | Cadm2 | Gm49685 | Nwd2 | Sorbs2 | Tafa1 | Kcnq5 | Kcnip4 | Camk2a | Tmem132d | Fhod3 | Rims1 | Sidt1 | Khdrbs3 | Sphkap | Kcnb2 | Lrfn5 | Nrg3 | Adcy2 | Opcml | Lingo2 | Csmd1 | Syt1 | Chrm3 | Fat3 | Pcsk2 |
| 7 | 1,550 | TEGLU3 | TEGLU2 | Hs3st4 | Etl4 | Frmpd4 | Cdh18 | Dpp10 | Ptprd | Arpp21 | Khdrbs3 | Kcnh7 | Zfpm2 | Garnl3 | A830018L16Rik | Nrg3 | Chsy3 | Fut9 | Pde4d | Ryr2 | Pde1a | Nos1ap | 4930551E15Rik | Csmd1 | Ano3 | Dmd | Nav3 | Htr1f | Dlg2 | Adcy2 | Dlc1 | Mmp16 | Syt1 | Tle4 | Vxn | Grm8 | 4930578G10Rik | Gm17167 | Sv2b | Nalf1 | Kalrn | Gm12394 | Rims1 | Asic2 | Gria3 | Mctp1 | Mgat4c | Me3 | Kcnma1 | Tmem178 | Opcml | Large1 | Rbfox1 |
| 8 | 1,263 | - | - | Meis2 | Rgs9 | Phactr1 | Dgkb | Rarb | Gm10754 | Ryr3 | Caln1 | Pbx3 | Adcy5 | Slc4a4 | Cacna2d3 | Cacnb2 | Mbp | Camk4 | Kcnab1 | Dach1 | Pde10a | Foxp1 | 6530403H02Rik | Pde7b | Galntl6 | Gnal | Spock3 | Grm5 | Kcnq5 | Mctp1 | Robo2 | Reln | Plp1 | Zswim6 | Hs6st3 | Elmod1 | Ppp3ca | Unc13c | Atp2b1 | Gprin3 | Pcp4 | Strn | Qk | Alcam | Dcc | Zfp385b | Pdzd2 | Cntn5 | Runx1t1 | Plcb1 | Neto1 | Mobp | Igsf11 |
| 9 | 1,197 | - | - | Lhfpl3 | Tnr | Ptprz1 | Xylt1 | Pcdh15 | Sox6 | Vcan | Dscam | Lrrc4c | Epn2 | Adarb2 | Nxph1 | Zeb1 | Gm4876 | Sgcd | Brinp3 | Npas3 | Sox2ot | Lsamp | Ptprt | Gpc5 | Slc35f1 | Sox5 | Sema6d | Pdgfra | Luzp2 | Maml2 | Nav3 | Csmd3 | Erbb4 | Nlgn1 | Opcml | Dpyd | Marchf1 | Nrxn1 | Grid2 | Mmp16 | Arhgap31 | Cntn1 | Megf11 | Chst11 | Zfp462 | Anks1b | Nckap5 | Tmem132d | Usp24 | Cspg4 | Ppp2r2b | Sntg1 | Dscaml1 |
| 10 | 1,025 | TEGLU11 | TEGLU10 | Dpp10 | Opcml | Khdrbs3 | Arpp21 | Sv2b | Kalrn | Ppm1e | Gm49678 | Satb2 | Mef2c | Schip1 | Cadps | Pde1a | Tmem132d | Chrm3 | Clstn2 | Grin2a | Ryr2 | Kcnh7 | Kcnip4 | Syt1 | Ldb2 | Cnksr2 | Csmd2 | Nav3 | Nell2 | Htr1f | Kcnt2 | Pcsk2 | Gria3 | Camk2a | Rapgef5 | Nrg3 | Sgcz | Ext1 | Dlgap2 | Msra | Grm8 | Kcnq5 | Nrcam | Kcnj6 | Nos1ap | Asic2 | Prkag2 | Sdk2 | Rimbp2 | R3hdm1 | Aopep | Pex5l | Klhl29 |
| 11 | 1,010 | COP1 | NFOL1 | Qk | 9630013A20Rik | Fyn | Bcas1 | Tns3 | 9530059O14Rik | Itpr2 | Dnm3 | Nfasc | Zeb2 | St18 | Pcdh7 | Nckap5 | Sema5a | Slc44a1 | Plp1 | Sirt2 | Lcorl | Cdh20 | Dock9 | Etv6 | Mbp | Kank1 | Tnr | Tcf7l2 | Erbb4 | Luzp2 | Fmnl2 | Ust | Xist | Gm10530 | Enpp6 | Rictor | Slc22a23 | Tmem163 | Mpzl1 | Ankrd28 | Epb41l2 | Kazn | Pkp4 | Dock4 | Cnksr3 | Map4k4 | Zdhhc14 | Ankrd44 | Opcml | Trio | Tmem108 | Chn2 | Lsamp |
| 12 | 912 | - | - | mt-Co3 | Sparc | mt-Co1 | Col1a2 | Col1a1 | Cmss1 | Cfh | mt-Co2 | mt-Atp6 | Actb | Runx1 | Airn | Ccnd3 | mt-Nd1 | mt-Nd4 | Tex14 | Cst3 | Gnas | mt-Cytb | Hbb-bs | Hba-a1 | Gm48619 | Hsp90ab1 | Hba-a2 | Foxn3 | Tmsb4x | Maml3 | Neat1 | Tgfbr1 | mt-Nd2 | Calm1 | Epb41l2 | Rrbp1 | Lyn | Lpp | Cped1 | Calm2 | Lrmda | Rps29 | Syt2 | Hexb | Ebf1 | Serinc3 | Spp1 | Pabpc1 | Inpp5d | Son | Rpl38 | Eef2 | Rplp1 |
| 13 | 883 | - | - | Grip1 | Dlgap1 | Tcf4 | Galntl6 | Kcnmb2 | Hcn1 | Erbb4 | Nxph1 | Kcnip1 | Dlgap2 | Kcnc2 | Xkr4 | Cntnap2 | Etl4 | Cadps | Rbms3 | Elavl2 | Pam | Grik1 | Sh3rf3 | Col19a1 | Ptchd4 | Oxr1 | Snhg11 | Alk | Ptprm | Kcnc1 | Astn2 | Thrb | Maf | Frmd5 | Nrxn3 | Gria4 | Osbpl3 | Snhg14 | Dlx6os1 | Gad2 | C130071C03Rik | Sntg1 | Fgf12 | Scn1a | Slc2a13 | Ubash3b | Rasgrf2 | Klf12 | Meg3 | Cacna1a | Srrm4 | Robo1 | Cntnap4 |
| 14 | 583 | - | - | Zbtb20 | Gria1 | Epha7 | Plxna4 | Nr3c2 | Galnt17 | Tafa2 | Ppfia2 | Dab1 | Grin2a | Sphkap | Clstn2 | Gm20754 | Dlgap1 | Ryr2 | Nell2 | Prkce | Kalrn | Erc2 | Ppp3ca | Mctp1 | Cadm2 | Lrrtm4 | Ahcyl2 | Zfpm2 | Rfx3 | Cacna1e | Kcnj6 | Nrg3 | Tcf4 | Sema5a | Wipf3 | Shisa6 | Gria2 | Ntrk3 | Epha6 | Nrp1 | Cyp7b1 | Camk2a | Epha4 | Dlgap2 | Ak5 | Nebl | Tmem108 | Btbd9 | St6galnac5 | Dok6 | Cdh8 | Gabrb3 | Ccdc85a |
| 15 | 558 | PER1 | PER2 | Flt1 | Actb | Bsg | Adgrl4 | Tmsb4x | Slc2a1 | Sparc | Rgs5 | Sptbn1 | Ptprb | Nostrin | Cldn5 | Slco1a4 | Epas1 | Sgms1 | Abcb1a | Slco1c1 | Igfbp7 | Nfkbia | Ccdc141 | Igf1r | Spock2 | Utrn | Pltp | Calm1 | Pglyrp1 | Adgrf5 | Ly6c1 | Clic4 | Heg1 | Cmtr2 | Mecom | Eng | Gpcpd1 | Cmss1 | Myl12a | Itm2a | Ahnak | Klf2 | Fn1 | Col4a1 | Ubb | Syt2 | Id1 | Ctla2a | Akap12 | S1pr1 | Hmcn1 | Selenop | Pdgfd |
| 16 | 557 | - | - | Trpc4 | Dgkg | Gria1 | Grm5 | Nkain3 | Slc8a1 | Meg3 | Myo5b | Tenm2 | Nalf1 | Usp29 | Sntg1 | Gria2 | Dlg2 | Fgf12 | Mdga2 | Lingo2 | Lncpint | Dpp6 | Ryr2 | Ppm1e | Ripor2 | Nrxn3 | Adgrb3 | Ryr3 | Tmem178b | Xkr6 | Lrrfip1 | Prdm16 | Dlgap1 | Cdr1os | Gabra2 | Trpm3 | Tro | Epha6 | Gabrg3 | Unc5d | Phactr1 | Arhgap6 | Trio | Grm8 | Snhg14 | Galnt13 | Shisa6 | Nhs | Epha5 | Slc35f1 | Focad | Snhg11 | Rbfox2 |
| 17 | 384 | - | - | Meis2 | Nrxn3 | Dpp6 | Pbx3 | Plcb1 | Phactr1 | Tenm4 | Foxp2 | Grip1 | Myt1l | Gria1 | Celf4 | Robo1 | Cacna1c | Grin2a | Gabrg3 | Celf2 | Gad2 | Ssbp2 | Tshz1 | Gm26871 | Gabrb3 | Slc35f1 | Galntl6 | Asic2 | Adarb2 | Neto1 | Gm1604a | Runx1t1 | Dlg2 | Trpm3 | Rbms3 | Syt1 | Necab1 | Adamts3 | Cacnb2 | Gpc6 | Sipa1l1 | Cnksr2 | Caln1 | Pcdh15 | 5730522E02Rik | Ccser1 | Hs6st2 | Adgrb3 | Kazn | Pbx1 | Grm5 | Olfm3 | Slc2a13 |
| 18 | 371 | - | - | Asic2 | Tenm3 | Ebf2 | Grm8 | Nrg3 | Clstn2 | Snhg11 | Nrp2 | Epha3 | Ptprd | Sgcd | Ntm | Meg3 | Zfhx3 | Shisa6 | Cntnap5a | Ebf3 | Mgat4c | Cacna2d1 | Plcb4 | Msi2 | Ntng1 | Ank3 | C130073E24Rik | Sema5a | Csmd1 | Prkg1 | B130024G19Rik | Ctnna2 | Sorcs3 | Khdrbs2 | Schip1 | Rbms3 | Sema3a | Adgrl3 | Tenm2 | Sema6d | Ak5 | Pcdh9 | Fgf12 | Eps8 | Snhg14 | Pbx1 | Lhfpl3 | Cdh12 | Tshz2 | Rasal2 | Ccser1 | Inpp4b | Gm45455 |
| 19 | 325 | - | - | Nwd2 | Trpm3 | Kcnma1 | Kctd8 | Cntnap2 | Rbms3 | Apba1 | Cpne4 | Vav3 | Robo1 | Cacna1e | Msi2 | Syt9 | Dpp6 | Pbx1 | D130079A08Rik | Scube1 | Cadps2 | Car10 | Fat3 | Mgat4c | Thsd7a | Cdk14 | Slit2 | Pam | Nrg3 | Nrp2 | Kcnip1 | Dach1 | Grip1 | Snhg11 | Rgs6 | Gm29478 | Gria1 | St6galnac5 | Pde1a | Tenm2 | Gfra1 | Gabbr2 | Kcnd2 | Tafa1 | Pde4d | Galnt13 | D130009I18Rik | Thsd7b | Erc2 | Lcorl | Macrod2 | Kcnh5 | Cnnm2 |
| 20 | 302 | - | - | Nfib | Zbtb20 | Tcf4 | Pbx1 | Meis2 | Nol4 | Xist | Nfia | Sox2ot | 2610307P16Rik | Auts2 | Gm4258 | Mir99ahg | Ccnd2 | Map2 | C130071C03Rik | Dlx6os1 | Setbp1 | Ctnna2 | Nrxn3 | Msi2 | Ccdc88a | Maml3 | Dleu2 | Tead1 | Gm3764 | Gm29260 | Zeb1 | Mpped2 | Pou2f1 | Tox3 | Igf1r | Nedd4l | Tiam2 | Klf12 | Dclk2 | Ncam1 | Mir100hg | Chd7 | Pantr1 | Trim2 | Zeb2 | Syne2 | Maml2 | Srgap2 | Gad2 | Arid1b | Tmem131l | Sox6 | Plcl1 |
| 21 | 282 | MOL1 | MFOL2 | Mobp | Plp1 | Mbp | Tmeff2 | Pcdh9 | Plcl1 | Map7 | St18 | Pde4b | Zfp536 | Dock10 | Qk | Tspan2 | Mog | Prr5l | Zeb2 | St6galnac3 | Septin7 | Phlpp1 | Slc24a2 | Cdc37l1 | Nkain2 | Ccp110 | Enpp2 | Fnbp1 | Ano4 | Plekha1 | Cdh19 | Sytl2 | Rnf220 | Gm16168 | Exoc6b | Mag | Tmod2 | Mal | Kndc1 | Mast4 | Edil3 | Erbb4 | Malat1 | Ptprk | Cldn11 | Daam1 | Ppp2r3a | D7Ertd443e | Erbin | Gjc3 | Foxn3 | Klhl2 | Ppp1r16b |
| 22 | 278 | EPEN | EPMB | Spag16 | Zbtb20 | Cfap44 | Agbl4 | Dnah6 | Glis3 | Spef2 | Lrriq1 | Cfap69 | Cfap43 | Cfap54 | Ak9 | Dnah11 | Ccdc162 | Dnah9 | Cfap299 | Pacrg | Maml2 | 9530026P05Rik | Syne1 | Dnah7b | Nfia | Ccdc146 | Dnai4 | Adgrv1 | Hydin | Dnah12 | Shank2 | Gm4876 | Rfx3 | C230072F16Rik | Tmem212 | Msi2 | Pard3b | Spata17 | Vwa3a | Wwox | Gm973 | Zbbx | 3300002A11Rik | Spag6l | Cfap65 | Spag17 | Fhad1 | Rgs22 | Cfap61 | Kif9 | Adamts20 | Kif6 | Npas3 |
| 23 | 210 | DEINH1 | DEINH2 | Lrrc4c | Kcnmb2 | Slc35f1 | Hs3st4 | Zfp804a | Ubash3b | Esrrg | Fign | Galntl6 | Nalf1 | Dlgap1 | Slc44a5 | 4930551E15Rik | Kcnma1 | Gm13629 | Gria4 | Kctd16 | Fgf13 | Rgs6 | Cdh13 | Gad2 | Tenm1 | Ak5 | Meg3 | Asic2 | Nxph1 | Elavl4 | Marchf1 | Scn3a | Grik2 | Agbl4 | Tmem108 | B130024G19Rik | Zmat4 | Mmp16 | Egfem1 | Inpp4b | C130073E24Rik | Il1rapl1 | Gabra3 | Vwc2 | Sgcz | Chrm2 | Etl4 | Rab3c | Snhg11 | Rbms3 | Prkg1 | Kcnc2 | Btbd11 |
| 24 | 76 | TEGLU10 | TEGLU11 | Dpp10 | Celf2 | Arpp21 | Gm10754 | Sv2b | Csmd1 | Ano3 | Phactr1 | Cnksr2 | Rarb | Dlgap2 | Kcnh7 | Etl4 | Khdrbs3 | Cacna2d3 | Dlg2 | Rgs9 | Mef2c | Nrg1 | Atp2b1 | Ryr2 | Dach1 | Pde1a | Erc2 | Kcnq5 | Grin2a | Foxp1 | 6530403H02Rik | Cacnb2 | Kalrn | Kctd16 | R3hdm1 | Me3 | Ptprd | Pcsk2 | Gm15155 | Itpr1 | Pde10a | Camk4 | Homer1 | Ryr3 | Kcnab1 | Lrrc7 | Elmod1 | Prkcb | Mctp1 | Trank1 | Adcy5 | Slit3 | Nav3 |
