Analysis Report   |   PIPseeker 01.01.06

test
Force 2706

Key Metrics

Total Reads 108,000,000Total Transcripts in Cells 47,636,764
% Mapped 93.33Median Transcripts per cell 15,676
# Cells 2,706# Genes expressed in Cells 48,663
Mean Reads Per Cell 39,911Median Genes Per Cell 3,152
% Reads in Cells 74.77Duplication rate 1.571
% Mitochondrial transcripts in cells 3.11

Clustering

Cluster Cell Count Feature Rank
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1450hg_RPL3hg_RPS6hg_HNRNPA1hg_RPL4hg_RPS7hg_RPLP0hg_RPL7Ahg_RPL6hg_ENSG00000258344hg_RPL14hg_IMPDH2hg_RPL5hg_EEF1Ghg_EEF1A1hg_RPL7hg_RPS3hg_RPL29hg_RPL15hg_PKMhg_RPS19hg_RACK1hg_RPL35Ahg_RPS3Ahg_ATP5MC2hg_HSP90AB1hg_RPL41hg_RBFOX2hg_NPM1hg_ENSG00000257322hg_RPL12hg_STEAP1Bhg_LDHBhg_RPL32hg_BTF3hg_CCT3hg_RPS4Xhg_SLC25A5hg_RPL10Ahg_RPS18hg_RPL39hg_PPIAhg_BAIAP2L1hg_RPS9hg_EIF3Ehg_OOEPhg_ACTG1hg_RPL17hg_RPS5hg_RPS8hg_CHCHD3
2342hg_MIFhg_RPS15hg_COX5Bhg_NDUFB10hg_NDUFS6hg_ATP5IF1hg_LSM7hg_GPX1hg_DDThg_NME2hg_NDUFAB1hg_GPX4hg_NDUFB11hg_SELENOHhg_RPL13hg_CHCHD2hg_NDUFAF3hg_PSMD8hg_APRThg_NDUFS8hg_RPL8hg_HMGN2hg_RABAC1hg_AURKAIP1hg_NDUFS7hg_MDKhg_ACTBhg_PRDX4hg_SIVA1hg_UQCR11hg_GNG5hg_VKORC1hg_MRPL55hg_COX8Ahg_ATP5F1Bhg_SLC25A3hg_MDH2hg_NDUFB7hg_HLA-Chg_PSMA7hg_ENSG00000236449hg_H3-3Ahg_CCDC124hg_BSGhg_TUFMhg_PGAM1hg_HLA-Ahg_PPDPFhg_EIF4EBP1hg_UQCRC1
3333mm_Loxmm_Col1a1mm_Col1a2mm_Sparcmm_Mmp2mm_Bgnmm_Cst3mm_Gabarapmm_Pcolcemm_Serf2mm_Fstl1mm_Snhg18mm_Prdx5mm_Uqcrhmm_Thbs1mm_Fn1mm_Cald1mm_Col6a1mm_Cnn2mm_Npc2mm_Ndufv3mm_Ifitm2mm_Lrp1mm_Fbln2mm_Col4a1mm_Thbs2mm_Myl6mm_Gnasmm_Lxnmm_Tmem59mm_mt-Co3mm_S100a4mm_Timp2mm_Rcn3mm_Col3a1mm_mt-Nd4mm_Map1lc3bmm_Fbln5mm_Cd81mm_Pfdn5mm_Lbhmm_Nedd4mm_mt-Atp6mm_Thy1mm_Rpl37amm_mt-Cytbmm_Cyb5r3mm_Gsnmm_P4hbmm_S100a11
4251mm_Ftl1mm_Rps27amm_Ftl1-ps1mm_Rps12mm_Rps23mm_F630206G17Rikmm_Rpl19mm_Grik3mm_2410006H16Rikmm_Rps7mm_Gas5mm_Rps6mm_Rpl35amm_Rpl32mm_Rps24mm_Rps5mm_Rpl14mm_Rab39mm_Rpl34mm_Rpl23amm_Rpl18mm_Atp6v1g1mm_Rps20mm_Carfmm_Rps15amm_Rps18mm_Rpl17mm_Rplp1mm_Ddit3mm_Rplp0mm_Rpl26mm_Rack1mm_Rps27mm_Rps3mm_Rpl18amm_Ctslmm_Rps16mm_Rpl13amm_1110038B12Rikmm_Rps18-ps5mm_Gm9750mm_Rpl23mm_Rps13mm_Rpl12mm_Rpl30mm_Zfas1mm_Rpl35mm_Rpl36mm_Rps19mm_Heph
5207mm_Pfn1mm_Cox6a1mm_Cox8amm_Rpl13mm_Ndufb2mm_Atp5dmm_Psmb4mm_Chchd2mm_Fth1mm_Bsgmm_Tpt1mm_Atp5bmm_Eif5amm_Phkg1mm_Snrpfmm_H2ajmm_Igfbp6mm_Rps2mm_Slc25a3mm_Pebp1mm_Cox5amm_Gpx1mm_Dlk1mm_Cox14mm_Atp5g3mm_Sec61bmm_Cox5bmm_Eif4ebp1mm_Selenofmm_H2-D1mm_Myl6mm_Sin3bmm_Rcn3mm_Gsto1mm_Cox7bmm_Calm1mm_Edf1mm_S100a4mm_Lmnamm_S100a6mm_Rabac1mm_Romo1mm_Naxemm_Prelid1mm_Gng5mm_Hmgn1mm_Mrpl54mm_Rplp2mm_mt-Co2mm_Atp5g1
6197mm_Pcnamm_Ranbp1mm_Dtymkmm_Eif5amm_Hmgb2mm_Cks1bmm_Tymsmm_Snrpfmm_H2az1mm_Pfn1mm_Tuba1bmm_Dctpp1mm_Tk1mm_Dutmm_Pclafmm_Mrpl12mm_Atp5bmm_Snrpd1mm_Ndufb2mm_Selenohmm_Cox8amm_Il31ramm_Atp5dmm_Ranmm_Snrpd2mm_Cox6a1mm_Rpl13mm_Nhp2mm_Cycsmm_Rnaseh2cmm_Lsm2mm_Orc6mm_Banf1mm_Fabp5mm_Gm10053mm_Nme1mm_Srsf7mm_Uqcrqmm_Psmb4mm_Gins2mm_Eif4ebp1mm_Idh2mm_Rpa3mm_Chchd2mm_Dlk1mm_1810037I17Rikmm_Spc24mm_Phkg1mm_Lsm5mm_Ppia
7173hg_HSPA5hg_MORF4L2hg_SSR3hg_EEF1Ghg_HSP90B1hg_UBChg_EIF3Dhg_TMBIM6hg_EEF1A1hg_RPLP0hg_RPL3hg_RPL39hg_STEAP1Bhg_KPNA2hg_TAGLN2hg_OOEPhg_CYCShg_XISThg_LDHAhg_CHCHD3hg_RPL4hg_SARS1hg_SAT1hg_ZFAS1hg_NCLhg_NPM1hg_SEC13hg_OSTChg_EEF2hg_SSR2hg_SELENOKhg_ARF4hg_PPIBhg_RACK1hg_RPL26hg_RPS19hg_EIF1hg_RPL5hg_PRPS1hg_XRCC6hg_SSR1hg_MORF4L1hg_RSL24D1hg_CCNB1IP1hg_HNRNPKhg_PGK1hg_SNHG16hg_TMEM258hg_GAPDHhg_SHMT2
8168mm_Eef1gmm_Hsp90ab1mm_Phgdhmm_Rpl3mm_Pkmmm_Anxa2mm_Cct5mm_Hspd1mm_Rpl6mm_Lgals1mm_Rps3a1mm_Rpl4mm_Eef2mm_Nclmm_Rpl41mm_Psat1mm_Rpl11mm_Slc25a5mm_Asnsmm_Cct7mm_Prdx6mm_Gm10076mm_Eef1a1mm_Csmm_Eif3imm_Setmm_Rpl7amm_Eno1mm_G630055G22Rikmm_Dapk1mm_Rpl7mm_Rplp0mm_Gm40271mm_Rps19mm_Npm1mm_Rps8mm_Rpl36mm_Rpl8mm_Rpl14mm_Atp5c1mm_Eno1bmm_Fdpsmm_Skint6mm_Atp5a1mm_Cct2mm_Tmsb10mm_Rps3mm_Gm9844mm_Rps17mm_Yars
9168hg_CHCHD2hg_PFDN2hg_EIF1hg_RNPS1hg_MIFhg_SNHG32hg_RPL8hg_EIF4EBP1hg_SERBP1hg_LSM7hg_RPL13hg_ARF1hg_CYCShg_RPL18hg_SEC61Ghg_NDUFAB1hg_SELENOKhg_VKORC1hg_PDCD5hg_NME2hg_ATF4hg_SNRPA1hg_GPX4hg_NDUFAF3hg_RPS15hg_TPT1hg_TMED9hg_UCHL3hg_COPEhg_SNRPBhg_GAS5hg_OAZ1hg_DDThg_GNG5hg_NDUFS6hg_PSMD8hg_SNU13hg_ZFAS1hg_CKS1Bhg_SEC61Bhg_NANShg_RPL36ALhg_UBE2Chg_APRThg_HSPA5hg_RPLP2hg_PSMD7hg_AP2S1hg_MRPS24hg_SLC3A2
10148mm_Hmgb2mm_Tuba1bmm_Tubb4bmm_Cenpamm_Birc5mm_Pttg1mm_Cdca3mm_Il31ramm_Jpt1mm_Cdc20mm_Tuba1cmm_Cks2mm_Tubb5mm_Tuba1amm_Knstrnmm_Cdca8mm_Cks1bmm_Ube2cmm_Lockdmm_Sntg1mm_Selenohmm_Ccnb1mm_Calm2mm_Dynll1mm_H2az1mm_Tubb6mm_Pclafmm_Hmgb1mm_Pimregmm_Ccna2mm_Cenpwmm_Racgap1mm_Cdk1mm_Cdkn3mm_Aurkamm_Stmn1mm_Hmgn2mm_Kpna2mm_Spc24mm_Cenpmmm_H2az2mm_Lsm5mm_Anp32emm_Gm10184mm_Rangap1mm_Lsm3mm_Tk1mm_Hnrnpa1mm_Tacc3mm_Mad2l1
11116hg_BIRC5hg_ACTG1hg_GAPDHhg_HMGB2hg_TUBA1Ahg_PGK1hg_C4orf3hg_COX7A2hg_TMEM256hg_PTTG1hg_TPI1hg_CKS2hg_ALDOAhg_TUBBhg_MORF4L2hg_TUBA1Bhg_UBBhg_ENSG00000285043hg_TUBB4Bhg_H3-3Bhg_WDR54hg_NPC2hg_BANF1hg_COMMD6hg_MORF4L1hg_SEC61Ghg_ARF1hg_OST4hg_JPT1hg_CD63hg_CALM2hg_SERF2hg_TMSB10hg_CENPWhg_MYL6hg_DYNLL1hg_TUBA1Chg_MALAT1hg_RHOAhg_AURKBhg_SONhg_FTLhg_HLA-Ahg_BLOC1S1hg_HNRNPA2B1hg_UBChg_TMED9hg_ATP5MGhg_TMEM9hg_UQCRB
12109mm_Phgdhmm_Shmt2mm_Ptmamm_Ranmm_Cnbpmm_Nclmm_Tuba1bmm_H2az1mm_Cks1bmm_Nop56mm_Nhp2mm_Srsf7mm_Cct7mm_Trp53mm_Stmn1mm_Tubb5mm_Hmgb2mm_Lrp1bmm_Hmgb1mm_Pcnamm_Banf1mm_Rpl6mm_Eif4a1mm_Ruvbl2mm_U2af1mm_Ddx39amm_Prmt1mm_Tcp1mm_Psat1mm_Eef1gmm_Cycsmm_Mad2l1mm_Il31ramm_Pfdn6mm_Esdmm_Cct5mm_Exosc8mm_Lsm5mm_Ppiamm_Pttg1mm_Rpl4mm_Eif2s1mm_Hspa8mm_Nop58mm_Rps3mm_Hspe1mm_Sarsmm_Ebna1bp2mm_Pa2g4mm_Gm10053
1344hg_MIFhg_GPX4hg_UBE2Chg_RPL13hg_NDUFB10mm_Pdcd5hg_PSENENmm_Ptnhg_RHOChg_LAPTM4Bhg_HLA-Cmm_Lsm5mm_Hmgb2mm_Cdkn1ahg_NUBP2hg_SAT1hg_CKS2hg_MID1mm_Chmp3mm_Snhg1mm_Vkorc1hg_DYNLL1hg_SELENOMmm_Spp1mm_Paip2mm_Mpc1mm_Gabarapl2hg_CHCHD2mm_Pfn1hg_FARSAhg_ENSG00000286264hg_ACTBhg_HMGN2hg_ZNHIT1hg_TMSB4Xmm_Sdhaf4hg_MT-CYBhg_MRPL28mm_Cox5bmm_Ldhbmm_Mpc2hg_ECHS1hg_C17orf49hg_SDHChg_NDUFB11hg_NANSmm_Tm2d2mm_Rpl13hg_FTH1hg_DDT

Barnyard Metrics

# human cells 1,248# mouse cells 1,413
Total human transcripts in human cells 19,904,665Total mouse transcripts in mouse cells 25,934,147
Median human transcripts per human cell 14,248Median mouse transcripts per mouse cell 16,402
# human genes expressed in human cells 24,999# mouse genes expressed in mouse cells 20,947
Median human genes per human cell 2,739Median mouse genes per mouse cell 3,184
% mouse transcripts in human cells 1.19% human transcripts in mouse cells 1.4
# Multiplets 45