Analysis Report   |   PIPseeker 03.00.00

Force 32356

Key Metrics

Total Reads1,067,049,515Reads Above Min. Length1,037,194,724
Reads w. Valid Barcodes989,744,606Reads Mapped to Transcripts922,444,134
% Reads Mapped93.2% Reads in Cells78.53
Cells32,356Mean Reads Per Cell32,978
Duplication Rate1.682% Sequencing Saturation40.56
Transcripts in Cells465,612,880Median Transcripts Per Cell12,716
Genes Expressed in Cells63,338Median Genes Per Cell3,505
% Mito. Transcripts in Cells4.46

Clustering

Cluster Cell Count Feature Rank
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14,684mm_Serf2mm_Cst3mm_Thbs2mm_Ctsbmm_Loxmm_Gabarapmm_Col1a2mm_Map1lc3bmm_Tmem59mm_Col1a1mm_Uqcrhmm_Sparcmm_Fstl1mm_Slc38a2mm_Dcnmm_Rbp1mm_S100a4mm_Snhg18mm_Mmp2mm_Npc2mm_Pcolcemm_mt-Nd4mm_Aebp1mm_Lrp1mm_Cd63mm_Itm2bmm_Psapmm_B2mmm_Laptm4amm_mt-Co1mm_Cox6cmm_Prdx5mm_Ifitm2mm_mt-Cytbmm_Cald1mm_Ndufv3mm_mt-Co2mm_Myl6mm_Vcanmm_Rcn3mm_Tmem256mm_Gnasmm_Romo1mm_Srp14mm_mt-Co3mm_1810058I24Rikmm_Thy1mm_Tsc22d1mm_Prrx1mm_S100a11
24,665mm_Rpl13mm_Rpl37mm_Rpl18amm_Rps18mm_Rps7mm_Rps5mm_Rps27mm_Rpl23amm_Rps23mm_Rps6mm_Gas5mm_Rpl13amm_Rpl18mm_Rpl36amm_Rps19mm_Rab39mm_Rps27amm_Rpl32mm_Rps18-ps5mm_Rps14mm_Rps9mm_Rps28mm_Rps15amm_Rpl17mm_Rpl35mm_Rpl23mm_Rps26mm_Rpl26mm_Rpl24mm_Gm2000mm_Rpl39mm_Rps16mm_Rpl21mm_Rpl19mm_Rps8mm_Rps25mm_2410006H16Rikmm_Rpl14mm_Rps11mm_Rpl6mm_Rps29mm_Rpl34mm_Rps13mm_Rpl9mm_Rpl15mm_Rpl35amm_Rps17mm_Faumm_Rplp2mm_Rpl27
34,356hg_FTH1hg_RPL13hg_RPL36Ahg_RPL24hg_RPS17hg_RPS15Ahg_RPL31hg_RPS20hg_RPL13Ahg_RPL32hg_COX6A1hg_RPS27hg_RPL21hg_EIF4EBP1hg_RPSAhg_COX5Ahg_RPL34hg_RPS29hg_RPLP1hg_RPL27Ahg_RPS16hg_PLEKHA7hg_RPL37hg_RPL22L1hg_RPL37Ahg_RPL18hg_RPS27Ahg_TMA7hg_RPS13hg_LSM7hg_RPLP2hg_PPDPFhg_RPL26hg_TXNhg_RPL15hg_RPS3hg_RPS4Xhg_RPL23Ahg_RPS18hg_RPS8hg_PFN1hg_RPL30hg_RPS2hg_RPL29hg_RPS25hg_GAS5hg_RPS24hg_RPL10hg_SNRPBhg_RPS9
43,152hg_RPL11hg_RPL35Ahg_PARK7hg_ENO1hg_AURKAIP1hg_MT-CO2hg_ENSG00000287001hg_SDHBhg_SNRPChg_NDUFB9hg_ATP5F1Bhg_PSMB1hg_AP2M1hg_NDUFB10hg_RPL9hg_MRPL20hg_STMN1hg_GSTO1hg_NBL1hg_LY6Ehg_NAA38hg_MICOS10hg_MT-CO3hg_NHP2hg_HMGN2hg_RPL22hg_BCAP31hg_GPX4hg_MRPL22hg_ALDOAhg_SERPINF1hg_EIF4EBP1hg_RPS14hg_SLIRPhg_APOOhg_LMAN2hg_MECOMhg_NDUFB7hg_PFDN2hg_PRDX5hg_MID1hg_MRPL47hg_NDUFS5hg_COX5Bhg_MT-ATP6hg_ENSG00000285043hg_PSMA7hg_FARP2hg_SSBP1hg_NAXE
52,782hg_RPLP0hg_RPL3hg_RPL4hg_RPL32hg_RPL14hg_RPL15hg_RPL29hg_RPLP1hg_NPM1hg_RPL5hg_RPS18hg_RPL36hg_RPL7hg_PTMAhg_RPS6hg_EEF1Ghg_EEF1A1hg_PLS3hg_RPL39hg_RPL12hg_RPL21hg_HSP90AB1hg_IMPDH2hg_RPS17hg_OOEPhg_RPS3hg_RPS7hg_EIF1hg_STEAP1Bhg_RPL7Ahg_RPL41hg_RPL6hg_HSPD1hg_SRP9hg_RPL24hg_RPS8hg_HNRNPA1hg_RPSAhg_RPS4Xhg_ENSG00000258344hg_XRCC6hg_HMGB1hg_RPS19hg_RPS3Ahg_RPS28hg_RPL34hg_RHOAhg_RPL10hg_SLC25A5hg_RPL22L1
62,739hg_HSPA8hg_ACTG1hg_PKMhg_TUBBhg_ACTBhg_ARF1hg_RPL15hg_PTMAhg_SRSF3hg_DNAJA1hg_HNRNPDLhg_SERBP1hg_RNPS1hg_CFL1hg_RBM8Ahg_NCLhg_RANhg_CALM2hg_HNRNPA2B1hg_RPL36ALhg_EIF4A1hg_TUBA1Bhg_PPIAhg_MORF4L1hg_EEF2hg_MORF4L2hg_HSP90AA1hg_HNRNPA1hg_EWSR1hg_SLC25A6hg_HNRNPKhg_RHOAhg_ENSG00000258344hg_HSP90AB1hg_PPP2R1Ahg_SRSF7hg_TUBB4Bhg_CCT3hg_HMGB1hg_PPDPFhg_PSMA4hg_RPL7Ahg_ENSG00000236449hg_RPL4hg_RPL22L1hg_RPL29hg_H3-3Ahg_HSBP1hg_ARHGDIAhg_EEF1A1
72,229mm_Serpinh1mm_2410006H16Rikmm_Pcolcemm_Bgnmm_Serpinf1mm_Hspa9mm_Eef2mm_Fn1mm_Adamts5mm_Slc3a2mm_Gas5mm_Sparcmm_Cyb5r1mm_Rcn3mm_Krtcap2mm_Eif2s2mm_Fbln2mm_Col1a2mm_Slc25a4mm_Nupr1mm_Ppp1r15amm_Eprsmm_Eif1mm_Thbs1mm_Calumm_Ccnd2mm_Col1a1mm_Trib3mm_Rpl4mm_Scpep1mm_Npm1mm_Tmem59mm_Rpl3mm_Asnsmm_Sarsmm_Laptm4amm_Phgdhmm_Hspa8mm_Psat1mm_Eif4ebp1mm_Itm2bmm_Ptnmm_Hspd1mm_Hspa5mm_Pabpc1mm_Loxmm_P4hbmm_Atp6v1g1mm_Eif3cmm_Malat1
82,214mm_Ptmamm_Ranmm_Txn1mm_Tuba1bmm_Banf1mm_Cks1bmm_Hmgb1mm_Ppiamm_Hmgb2mm_Selenohmm_Gclmmm_Lrp1bmm_Il31ramm_Lsm5mm_Ranbp1mm_Tubb5mm_Psat1mm_Snrpfmm_Eif5amm_Hnrnpa1mm_H2az1mm_Nme1mm_Fabp5mm_Lgals1mm_Shmt2mm_Hint1mm_Fdpsmm_Snrpd2mm_S100a10mm_Mifmm_Snrpgmm_Esdmm_S100a6mm_Snrpd3mm_Srsf3mm_Snrpd1mm_Hnrnpa3mm_U2af1mm_Mrps28mm_Stmn1mm_Clic1mm_Srsf7mm_Cycsmm_Nop56mm_Eif4a1mm_Phgdhmm_Pkmmm_Hmgn2mm_Tuba1amm_Rbm3
91,448hg_GNAShg_XISThg_MT-ND1hg_MT-ND4hg_MT-ND2hg_HNRNPUhg_YBX1hg_KPNB1hg_PCBP2hg_CKBhg_NUCB2hg_CANXhg_ATP1A1hg_SEThg_SRSF9hg_SFPQhg_NUCKS1hg_KHSRPhg_HNRNPDhg_RAC1hg_MAZhg_DHFRhg_MT-ATP6hg_XPO5hg_ENSG00000235979hg_TRIM28hg_ILF3hg_FBLhg_DDX17hg_CSDE1hg_EIF5Ahg_PRKDChg_CSNK1Ehg_SCDhg_PTBP1hg_CCNIhg_ENAHhg_UBA1hg_EEF2hg_YBX3hg_KHDRBS1hg_C1QBPhg_MT-ND3hg_CD81hg_ZNF703hg_RCN1hg_LARP1hg_PLPP3hg_RPS2hg_GTF2I
101,295mm_Fn1mm_Col1a2mm_Tpt1mm_mt-Co1mm_Col1a1mm_Gnasmm_Marcksmm_Timp2mm_mt-Co2mm_Mmp2mm_Bgnmm_mt-Nd3mm_Eef2mm_Fbln2mm_Aebp1mm_C9orf72mm_Lamp1mm_Eif3fmm_Ddb1mm_Egr1mm_mt-Nd4mm_Atf5mm_Tle5mm_Mmp14mm_Lima1mm_Col4a1mm_Slc22a27mm_Lrp1mm_Ybx1mm_Rps21mm_Rack1mm_Myh9mm_Pcbp2mm_Rps2mm_Thbs2mm_Agrpmm_Gas1mm_Calumm_Rpl5mm_Col3a1mm_Fstl1mm_Ahnakmm_Mrfap1mm_Cavin1mm_Asap1mm_Col4a2mm_Vat1mm_Rrbp1mm_Nedd4mm_Btbd7
111,100hg_XISThg_GNAShg_SFPQhg_YBX1hg_DDX17hg_KPNB1hg_IRS4hg_HNRNPUhg_MT-ND1hg_PCBP2hg_ATP1A1hg_CANXhg_MTRNR2L12hg_TRIM28hg_YBX3hg_SLIT2hg_ENAHhg_MAZhg_ZNF703hg_RAC1hg_ILF3hg_CKBhg_PRKDChg_CCNIhg_CSNK1Emm_Ptnhg_MARCKShg_AMOThg_SEThg_HNRNPDhg_KHDRBS1hg_HNRNPABhg_RBM26hg_LARP1hg_JUNhg_PRKAR2Ahg_RCN1mm_Thbs2hg_MARCKSL1hg_SRSF9hg_SCDhg_EIF3Bhg_GTF2Imm_Thbs1mm_Rbp1hg_C1QBPhg_FAF1hg_NUCB2mm_Fdpshg_KHSRP
12894hg_EIF1hg_GAS5hg_SLC3A2hg_SNHG32hg_SNHG15hg_MARS1hg_H4C3hg_CIRBPhg_DDIT4hg_RPLP0hg_NCLhg_STC2hg_PSAT1hg_SARS1hg_RAD23Ahg_YARS1hg_SHMT2hg_EXOSC8hg_MTHFD2hg_ZFAS1hg_EIF5hg_ATF3hg_UBChg_SERBP1hg_NOP58hg_NOP56hg_EIF4EBP1hg_SNHG1hg_PRPF19hg_DKC1hg_AK2hg_GARS1hg_EEF1Ghg_HEY1hg_HM13hg_TUBA1Bhg_CNBPhg_CTHhg_ADRM1hg_HSPA9hg_PYCR1hg_SAE1hg_EWSR1hg_TARS1hg_PSMG1hg_CDK4hg_RPLP1hg_COPS3hg_PRMT1hg_RPS3A
13764hg_RPL11hg_RPL35Ahg_PARK7hg_HSPD1hg_SDHBhg_NPM1hg_NDUFB9hg_RPL22hg_PSMB1hg_MRPL20hg_NBL1hg_MT-CO1hg_SLC25A5hg_SNRPChg_LDHAhg_RPS14hg_RPL9hg_ENO1hg_STMN1hg_ENSG00000287001hg_RPL3hg_ATP5MC2hg_HMGN2hg_MICOS10hg_HSP90AB1hg_RACK1hg_CCT6Ahg_NHP2hg_GPX4hg_MT-CO2hg_CLVS1hg_MID1hg_PPA1hg_PRDX3hg_NDUFB5hg_CCNG1hg_CCT3hg_ATP5PBhg_NME2hg_MECOMhg_MRPL22hg_BTF3hg_ATP5F1Chg_LDHBhg_CCT8hg_MRPS21hg_UQCRHhg_NDUFS5hg_COX4I1hg_DNAJC19
1434mm_Rps29mm_Lgals1mm_Ftl1mm_Nme2mm_Rplp0mm_Rps28mm_Rps8mm_Rplp1mm_Ppiamm_Rps17mm_Rpl11mm_Rpl35mm_Rpl14mm_Rps20mm_Rpl36mm_Rplp2mm_Rpl6mm_Rpl38mm_S100a6mm_Cfl1mm_F630206G17Rikmm_Rpl12mm_Nme1mm_Rps16mm_Ftl1-ps1mm_Gm2000mm_Grik3mm_Gclmmm_Rps25mm_Rps19mm_Mifmm_Rpl7amm_Rpl8mm_Faumm_Rps18-ps5mm_Rpl23amm_Rpl31mm_Rps3mm_Rps7mm_Cfap77mm_Rpsamm_Gm10076mm_Rps21mm_Gm11808mm_Rps13mm_Rps11mm_Rpl37amm_Rpl9mm_Rpl13mm_Rpl41

Barnyard Metrics

# human cells16,144# mouse cells15,138
Total human transcripts in human cells236,633,173Total mouse transcripts in mouse cells195,793,762
Median human transcripts per human cell12,968Median mouse transcripts per mouse cell11,793
# human genes expressed in human cells33,646# mouse genes expressed in mouse cells27,553
Median human genes per human cell3,271Median mouse genes per mouse cell3,271
% mouse transcripts in human cells2.11% human transcripts in mouse cells1.64
# Multiplets1,074